Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014035.1 Corchorus capsularis cultivar CVL-1 contig14056, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48931

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1389--1437
22
2.2
22
89
7
73
28
12
4
55
1.55
1463--1739
22
12.5
22
71
15
101
39
14
10
35
1.81
1621--1699
23
3.4
23
82
3
88
36
15
8
39
1.78
1597--1699
46
2.3
45
83
11
122
37
14
9
37
1.79
1869--1993
22
5.7
22
75
9
94
32
15
10
41
1.81
1871--2035
44
3.8
44
79
3
129
35
14
9
41
1.78
1888--2016
66
2.0
66
82
3
161
34
14
10
41
1.80
1932--2080
22
6.7
22
76
9
117
34
14
10
40
1.80
2121--2258
22
6.4
21
75
13
77
35
20
8
35
1.83
2136--2258
42
2.8
44
73
11
101
36
20
9
33
1.85
2170--2207
20
1.9
20
88
0
58
36
26
7
28
1.84
2317--2417
44
2.3
45
83
10
111
39
17
9
32
1.83
2349--2518
22
7.7
22
75
10
150
35
18
11
34
1.88
2363--2530
44
3.8
44
92
1
257
34
22
10
32
1.88
2720--2756
19
1.9
19
89
10
58
64
0
5
29
1.15
3749--3975
114
2.0
113
87
4
330
49
10
14
25
1.75
4241--4299
30
2.0
29
87
9
84
50
3
11
33
1.56
4253--4317
30
2.1
31
88
8
98
52
4
13
29
1.61
9294--9457
76
2.1
77
90
1
258
34
4
20
39
1.74
11597--11861
132
2.0
132
97
1
496
35
10
8
45
1.69
13726--13805
41
2.0
41
89
0
124
43
15
11
30
1.81
26751--26782
2
16.0
2
100
0
64
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28045--28380
171
2.0
171
99
0
663
32
13
13
40
1.83
37868--37894
13
2.1
13
100
0
54
44
22
0
33
1.53
38168--38253
29
3.0
29
94
0
145
34
20
23
20
1.96
38653--38682
5
5.8
5
92
7
51
16
0
0
83
0.65
39506--39542
4
9.2
4
87
0
56
70
0
24
5
1.08

Tables:   1

The End!