Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014036.1 Corchorus capsularis cultivar CVL-1 contig14057, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68556

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11511--11593
41
2.0
41
93
4
141
43
10
12
33
1.77
22572--22604
14
2.4
14
94
0
57
39
0
60
0
0.97
22627--22658
3
10.7
3
93
0
55
28
0
3
68
1.04
27781--27805
11
2.3
11
100
0
50
20
0
32
48
1.50
28652--28689
18
2.1
18
90
0
58
10
7
28
52
1.64
44686--44750
30
2.1
31
88
2
96
27
20
4
47
1.69
44692--44758
30
2.2
31
86
5
91
31
16
4
47
1.66
44849--44925
38
2.1
36
85
9
102
14
16
9
59
1.59
45059--45101
19
2.1
21
84
16
56
27
6
2
62
1.33
45267--45369
22
4.6
22
69
11
75
34
9
18
36
1.84
45341--45408
26
2.7
26
75
4
68
29
7
25
38
1.83
45507--45791
22
12.8
22
66
14
68
40
9
15
34
1.80
45584--45816
44
5.3
44
74
7
127
42
9
14
33
1.79
45651--45816
88
1.9
87
81
6
201
43
9
13
33
1.76
45935--46530
22
27.5
22
68
13
213
38
10
15
35
1.81
45935--46530
44
13.8
43
71
12
243
38
10
15
35
1.81
46087--46153
16
3.8
16
71
21
62
38
7
16
37
1.77
46065--46175
38
2.9
37
89
5
159
42
8
16
33
1.77
53153--53195
16
2.7
15
82
7
50
32
23
11
32
1.90
59244--59282
21
1.9
21
89
5
62
53
15
7
23
1.67
62984--63008
8
3.1
8
100
0
50
88
0
0
12
0.53

Tables:   1

The End!