Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014037.1 Corchorus capsularis cultivar CVL-1 contig14058, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111756

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1782--1816
3
11.7
3
100
0
70
68
0
31
0
0.90
6409--6436
13
2.2
13
100
0
56
35
7
21
35
1.81
15763--15807
23
2.0
23
95
0
81
28
17
20
33
1.95
16921--17333
206
2.0
206
97
0
781
36
15
14
33
1.88
18836--18874
20
2.0
20
84
0
51
58
10
23
7
1.56
22812--22855
17
2.6
17
80
16
56
45
0
2
52
1.13
22798--22861
29
2.3
27
83
5
74
42
0
3
54
1.16
23196--23237
21
2.0
21
100
0
84
23
38
28
9
1.86
25851--25907
22
2.8
21
82
15
66
29
0
22
47
1.52
35151--35209
2
30.5
2
77
19
63
49
1
3
45
1.28
41840--42152
131
2.4
130
82
4
355
38
15
14
32
1.87
41857--42152
130
2.3
131
83
2
346
38
15
13
32
1.87
42447--42478
2
16.0
2
93
0
55
50
0
3
46
1.17
56351--56400
19
2.7
19
84
9
68
42
2
0
56
1.11
62985--63280
109
2.8
109
85
4
372
41
8
8
41
1.66
71310--71370
31
2.0
31
83
6
79
34
14
22
27
1.94
75273--75326
26
2.1
26
92
0
90
29
40
12
16
1.86
77451--77621
88
1.9
88
86
2
245
40
18
8
32
1.80
85886--85925
21
1.9
21
85
10
55
25
20
10
45
1.81
93873--93899
7
3.9
7
100
0
54
14
0
14
70
1.17
95048--95205
80
2.0
80
87
0
226
36
12
21
30
1.90
96482--96541
29
2.1
29
100
0
120
41
16
3
38
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102840--102883
21
2.2
19
84
8
52
52
2
11
34
1.50
105024--105054
15
2.1
15
100
0
62
19
32
0
48
1.49
108788--108862
31
2.5
29
86
4
105
33
21
5
40
1.76

Tables:   1

The End!