genome.fa.s14038.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014038.1 Corchorus capsularis cultivar CVL-1 contig14059, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97839

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9061--9184	60	2.1	59	96	1	230	49	9	12	28	1.73
9635--9661	3	9.0	3	100	0	54	66	0	0	33	0.92
10488--10531	21	2.1	21	87	4	63	50	22	9	18	1.75
10498--10590	21	4.3	21	72	6	71	39	23	11	24	1.88
10615--10658	21	2.0	23	86	8	65	38	25	15	20	1.92
10601--11056	87	5.3	87	88	1	664	39	19	16	24	1.92
10702--10744	21	2.0	23	90	9	72	39	23	16	20	1.92
10602--11056	173	2.6	174	91	1	716	39	20	16	24	1.92
10875--10918	21	2.0	23	86	8	65	40	25	15	18	1.90
12118--12154	2	19.0	2	94	5	67	48	0	0	51	1.00
12510--12574	31	2.1	31	94	0	112	44	23	12	20	1.84
18041--18112	30	2.4	30	83	2	83	25	26	12	36	1.91
19208--19278	31	2.3	31	87	0	97	30	21	15	32	1.94
24606--24659	24	2.2	25	80	12	67	44	14	5	35	1.69
33290--33323	1	34.0	1	100	0	68	0	0	0	100	0.00
35312--35337	12	2.2	12	100	0	52	19	7	30	42	1.79
37165--37448	152	1.9	152	95	0	514	28	18	15	36	1.92
42914--42968	6	9.5	6	80	20	64	49	1	14	34	1.54
47105--47178	31	2.4	32	88	4	100	36	13	5	44	1.67
47277--47308	15	2.1	15	94	0	55	15	37	9	37	1.80
49390--49444	27	2.0	27	100	0	110	29	18	23	29	1.98
50605--50646	22	1.9	22	85	9	59	57	4	4	33	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50732--50777	5	9.6	5	86	9	69	56	0	19	23	1.42
53157--53274	59	2.0	59	100	0	236	28	15	25	30	1.96
56291--56380	43	2.1	43	100	0	180	43	15	16	24	1.87
58009--58148	61	2.4	58	87	6	201	26	17	27	28	1.98
64720--64764	23	2.0	22	82	4	54	31	8	13	46	1.74
69267--69301	17	2.1	17	100	0	70	48	5	11	34	1.63
69447--69474	2	14.0	2	100	0	56	50	0	0	50	1.00
69566--69648	42	2.0	42	85	4	114	30	26	14	28	1.95
69860--69902	11	4.0	11	78	6	52	6	39	27	25	1.81
69863--69902	21	1.9	21	89	0	62	7	40	27	25	1.82
72895--72921	13	2.1	13	100	0	54	7	7	29	55	1.55
73697--73752	22	2.5	22	80	8	60	53	1	1	42	1.21
78586--78721	17	8.2	17	90	2	161	22	16	31	30	1.95
78906--78957	12	4.1	12	75	22	52	36	1	5	55	1.35
78912--78969	27	2.1	27	100	0	116	37	3	6	51	1.46
78925--78985	27	2.3	26	83	11	70	40	6	8	44	1.60
80197--80279	18	4.6	18	83	0	112	10	31	15	42	1.82
80199--80279	36	2.2	36	91	0	135	11	30	16	41	1.82
80327--80357	15	2.0	16	93	6	55	12	32	19	35	1.90
80227--80405	93	1.9	92	87	6	263	16	24	20	38	1.93
80380--80418	15	2.6	15	88	8	53	17	17	23	41	1.91
80206--80418	93	2.3	92	77	7	241	15	24	20	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84725--84792	29	2.3	29	84	0	82	41	26	8	23	1.83
85244--85314	33	2.2	33	100	0	142	57	7	2	32	1.40
85640--85664	12	2.1	12	100	0	50	32	8	32	28	1.86
86505--86610	53	2.0	53	98	0	203	25	25	15	33	1.95
88098--88127	16	1.9	16	93	6	53	70	0	10	20	1.16
88234--88262	15	1.9	15	100	0	58	48	6	3	41	1.47
93879--93981	51	2.0	51	98	0	197	38	21	2	36	1.68
96469--96507	6	6.3	6	88	5	60	28	15	0	56	1.40
96468--96507	13	3.2	13	85	7	64	27	15	0	57	1.38
96649--96780	36	3.8	36	92	3	207	27	32	24	15	1.96
97135--97159	6	4.2	6	100	0	50	20	48	32	0	1.50

Tables:   1

The End!