Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014040.1 Corchorus capsularis cultivar CVL-1 contig14061, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123701

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4372--4400
6
4.8
6
100
0
58
34
0
34
31
1.58
6720--6746
14
1.9
14
100
0
54
33
0
7
59
1.25
9418--9456
20
1.9
20
84
5
51
48
12
10
28
1.74
12591--12623
15
2.3
15
89
5
50
60
3
0
36
1.12
12714--12745
14
2.1
16
88
11
50
53
0
18
28
1.45
18460--18576
39
3.0
39
87
5
166
17
26
7
47
1.75
18497--18560
20
3.2
20
65
12
51
17
29
4
48
1.67
22038--22065
2
14.0
2
100
0
56
50
0
0
50
1.00
22941--23018
41
1.9
41
91
0
129
41
19
14
25
1.89
23672--23728
30
1.9
30
96
0
105
35
17
14
33
1.90
25021--25056
4
9.0
4
100
0
72
25
0
0
75
0.81
26678--27236
22
25.6
22
68
10
168
36
13
9
39
1.78
26966--27045
23
3.5
23
81
1
90
40
13
7
38
1.73
27227--27293
19
3.5
19
87
2
98
22
22
13
41
1.88
27399--27623
22
10.3
22
70
11
133
33
13
10
42
1.78
27374--27991
44
13.5
44
66
16
192
35
16
10
38
1.82
27374--27539
88
1.9
87
83
10
214
33
13
9
43
1.76
27700--27766
23
2.9
22
75
14
64
31
17
10
40
1.84
27805--27988
22
8.3
22
80
10
108
38
18
10
32
1.86
27812--27922
46
2.5
44
81
10
118
38
17
11
32
1.86
28120--28151
6
5.3
6
92
0
55
18
0
31
50
1.48
28276--28341
31
2.1
31
83
5
80
43
4
19
31
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29462--29499
11
3.5
11
85
10
51
57
2
0
39
1.12
30787--30815
2
14.5
2
100
0
58
48
0
0
51
1.00
31187--31500
171
1.8
170
80
4
382
34
13
16
35
1.88
41116--41154
14
2.6
14
88
8
51
48
35
5
10
1.59
50728--50761
2
17.0
2
100
0
68
50
0
0
50
1.00
62619--62644
1
26.0
1
100
0
52
0
0
100
0
0.00
67924--68195
107
2.6
106
85
6
365
42
9
7
40
1.66
70708--70747
20
2.0
21
85
5
55
50
10
2
37
1.50
81973--82001
12
2.3
13
94
5
51
48
0
24
27
1.51
86688--86726
13
3.0
13
81
11
53
0
15
15
69
1.20
86688--86726
12
3.1
12
85
7
51
0
15
15
69
1.20
93303--93356
23
2.3
23
96
0
99
38
3
16
40
1.66
101164--101229
3
23.0
3
76
14
68
31
33
1
33
1.67
102562--102653
32
2.9
33
88
3
109
30
16
26
27
1.97
105917--105996
23
3.5
23
82
1
90
38
16
8
36
1.79
106026--106066
21
1.9
22
85
5
57
24
19
9
46
1.80
105647--106140
22
22.6
21
68
13
171
36
14
9
38
1.79
107027--107063
2
19.0
2
94
5
67
51
0
0
48
1.00
121508--121534
7
3.9
7
100
0
54
44
25
0
29
1.54

Tables:   1

The End!