Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014046.1 Corchorus capsularis cultivar CVL-1 contig14067, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36924

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3554--3612
15
3.9
15
84
0
82
28
28
8
33
1.87
5532--5576
22
2.0
22
100
0
90
33
35
17
13
1.89
8308--8359
24
2.2
24
85
0
68
13
19
21
46
1.84
8406--8561
63
2.5
61
80
7
172
7
26
16
50
1.71
13540--13583
18
2.4
18
88
0
61
15
25
31
27
1.96
16896--16990
31
3.1
31
84
1
129
34
25
21
18
1.96
23956--24027
29
2.4
29
81
2
81
40
26
11
22
1.87
24718--24750
17
1.9
17
93
0
57
27
9
12
51
1.69
35598--35706
40
2.7
40
85
4
130
33
10
8
47
1.67
35691--35861
22
7.8
22
67
12
66
35
15
8
40
1.78
35946--36248
22
14.1
22
72
11
94
37
14
9
38
1.79
36003--36060
23
2.5
23
88
0
80
43
13
6
36
1.71
35957--36060
46
2.3
46
81
3
113
40
13
10
35
1.79
36049--36096
16
2.7
18
81
9
55
41
12
10
35
1.77
36084--36247
44
3.7
44
80
6
163
35
13
9
42
1.76
36236--36273
20
2.0
20
84
5
51
26
21
13
39
1.89
36373--36493
22
5.5
22
81
3
127
33
14
9
41
1.80
36348--36493
44
3.3
44
76
7
143
33
13
10
42
1.78
36781--36841
29
2.0
30
84
9
79
52
4
13
29
1.61

Tables:   1

The End!