Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014048.1 Corchorus capsularis cultivar CVL-1 contig14069, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27274

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5153--5190
19
2.0
20
85
15
53
28
5
2
63
1.30
5388--5529
22
6.5
22
83
6
180
35
14
14
34
1.88
5354--5529
44
4.0
44
85
4
203
35
13
14
36
1.86
5661--5721
22
2.8
22
78
9
70
34
9
19
36
1.85
5661--5732
22
3.3
21
77
11
65
34
8
20
36
1.83
5843--5967
22
5.7
21
75
8
99
43
10
12
33
1.77
6079--6305
22
10.3
22
72
9
133
40
8
15
36
1.77
6217--6307
23
4.0
23
81
2
105
37
5
17
39
1.73
6272--6318
22
2.1
22
92
0
76
36
6
14
42
1.72
6406--6579
22
7.8
22
64
11
68
41
10
13
33
1.80
6715--6745
2
15.5
2
100
0
62
51
0
0
48
1.00
8108--8138
15
2.1
15
93
0
53
35
6
12
45
1.68
10878--10962
45
2.0
44
86
6
120
38
20
4
36
1.73
10983--11022
19
2.1
19
100
0
80
32
15
5
47
1.66
11234--11323
16
5.7
16
70
7
76
34
32
22
11
1.89
19119--19277
46
3.4
46
84
5
203
13
28
16
40
1.88
19262--19292
15
2.1
15
100
0
62
19
45
0
35
1.51
19216--19336
59
2.0
61
96
3
228
14
33
14
36
1.88
22550--22646
36
2.7
36
91
1
151
21
13
25
39
1.90
24215--24240
7
3.7
7
100
0
52
42
11
0
46
1.40
24932--25045
57
2.0
57
98
0
219
24
23
8
42
1.82

Tables:   1

The End!