Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014049.1 Corchorus capsularis cultivar CVL-1 contig14070, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52810

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
915--944
15
2.0
15
93
0
51
43
13
23
20
1.86
2125--2166
20
2.0
21
90
4
68
23
16
23
35
1.95
3839--3870
16
2.0
16
100
0
64
6
25
12
56
1.59
7709--7742
15
2.2
16
89
5
52
38
8
5
47
1.59
8975--9052
22
3.6
22
71
1
59
35
6
8
48
1.60
9042--9083
22
1.9
22
85
9
59
28
11
4
54
1.57
9065--9119
22
2.5
22
76
5
58
36
12
12
38
1.82
9140--9202
22
2.8
23
78
7
67
36
19
14
30
1.91
9233--9301
22
3.1
22
81
8
79
37
13
11
37
1.80
8974--9543
44
13.0
43
70
13
272
36
14
9
40
1.78
9290--9370
23
3.6
23
80
8
94
39
12
6
41
1.68
9264--9538
22
12.7
21
72
13
159
36
12
9
41
1.75
9246--9371
45
2.8
45
81
10
134
38
13
8
39
1.76
9663--10051
22
17.6
22
65
15
81
34
17
9
39
1.82
9789--9889
21
4.6
22
74
16
93
33
13
8
43
1.76
9927--10051
44
2.8
42
78
9
124
37
19
8
34
1.83
14087--14174
37
2.4
37
84
5
115
53
13
19
13
1.73
14293--14360
31
2.1
33
84
13
97
45
4
17
32
1.68
14300--14366
32
2.1
32
89
8
102
46
4
20
28
1.70
15189--15264
38
2.0
38
97
0
143
18
27
18
35
1.94
17973--18024
26
2.0
26
100
0
104
50
11
7
30
1.67
19761--19857
47
2.1
47
100
0
194
52
8
7
31
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20894--20919
1
26.0
1
100
0
52
100
0
0
0
0.00
26129--26207
37
2.1
37
95
0
140
39
12
10
37
1.77
28973--29003
15
2.1
15
93
0
53
32
38
12
16
1.86
29125--29164
21
1.9
21
94
0
71
17
30
32
20
1.95
37032--37069
11
3.2
12
86
13
53
71
0
23
5
1.07
39131--39344
106
2.0
106
96
1
394
30
21
19
28
1.98
40234--40288
27
2.1
27
82
3
67
27
16
9
47
1.76
46353--46386
14
2.4
14
90
0
50
2
52
2
41
1.31
46361--46389
14
2.1
14
100
0
58
0
55
0
44
0.99
52721--52807
2
43.0
2
97
2
165
49
0
49
1
1.08

Tables:   1

The End!