Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014051.1 Corchorus capsularis cultivar CVL-1 contig14072, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136671

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
521--600
29
2.7
29
88
3
106
40
12
18
28
1.87
2530--3476
440
2.2
439
89
1
1414
41
17
13
26
1.87
3962--4019
29
2.0
29
89
0
89
34
17
8
39
1.80
4219--4254
4
9.0
4
93
0
63
72
27
0
0
0.85
6307--6350
11
3.9
11
91
8
63
0
11
0
88
0.51
6307--6350
6
7.8
6
87
12
67
0
11
0
88
0.51
6843--6891
24
2.0
24
100
0
98
30
28
12
28
1.93
7665--7689
9
2.8
9
100
0
50
32
32
24
12
1.91
12276--12340
30
2.2
30
86
5
87
0
50
0
49
1.00
12276--12374
12
8.0
12
76
10
74
0
48
1
50
1.07
12280--12338
6
9.8
6
78
7
57
0
49
0
50
1.00
12463--12620
75
2.1
75
83
0
190
12
39
13
34
1.82
18260--18318
6
9.8
6
81
0
55
0
54
0
45
0.99
18260--18318
24
2.5
24
85
0
73
0
54
0
45
0.99
18292--18379
33
2.7
32
79
12
81
2
45
3
48
1.31
34328--34384
30
1.9
30
96
0
105
31
14
29
24
1.94
34620--34659
20
2.0
21
85
5
55
17
30
7
45
1.76
35512--35550
10
3.9
10
86
10
53
66
0
0
33
0.92
35514--35547
15
2.3
15
90
10
52
67
0
0
32
0.91
43374--43431
27
2.2
27
87
3
82
39
13
8
37
1.76
53022--53049
2
14.0
2
100
0
56
50
0
0
50
1.00
55762--55858
30
3.0
33
83
8
146
13
28
9
48
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57575--57618
21
2.1
21
83
8
54
43
0
2
54
1.12
59850--59884
5
6.8
5
90
6
52
17
0
0
82
0.66
59850--59887
16
2.4
16
86
4
60
15
0
0
84
0.63
62223--62259
18
2.1
18
94
0
65
45
5
18
29
1.72
67507--67824
163
2.0
164
88
5
486
45
10
14
29
1.79
74206--74248
6
7.2
6
87
10
61
55
16
27
0
1.41
85516--85580
30
2.1
31
85
2
87
32
18
4
44
1.70
86994--87145
66
2.3
65
84
5
191
36
9
15
38
1.80
86998--87146
44
3.4
43
83
9
171
36
10
14
38
1.80
86994--87193
22
9.0
23
76
9
150
34
9
17
39
1.82
87236--87375
22
6.4
22
74
16
105
37
7
17
37
1.78
87433--87494
21
2.7
22
82
12
72
45
9
9
35
1.70
87478--87649
22
7.8
22
71
11
84
41
9
12
36
1.75
87731--87804
20
3.6
20
88
3
103
43
10
16
29
1.82
87731--88305
22
26.6
22
67
16
168
40
9
15
35
1.79
87937--88042
45
2.4
44
82
7
133
42
9
12
35
1.75
88273--88320
22
2.2
22
81
7
53
50
8
14
27
1.71
91140--91182
20
2.2
20
83
8
52
72
2
23
2
1.08
92178--92219
20
2.2
19
86
4
57
35
14
28
21
1.92
92766--92815
24
2.1
24
88
7
75
28
20
28
24
1.99
93720--93761
20
2.0
21
86
4
59
38
23
19
19
1.93
94266--94304
17
2.3
17
90
0
60
71
0
2
25
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98813--98851
19
2.2
18
86
9
53
66
7
15
10
1.43
103426--103450
13
1.9
13
100
0
50
24
8
28
40
1.83
106896--107024
65
2.0
65
92
0
213
37
19
11
31
1.88
113090--113250
87
1.8
89
93
5
283
52
6
22
18
1.67
115908--115939
3
10.7
3
100
0
64
34
0
0
65
0.93
119442--119466
13
1.9
13
100
0
50
24
16
0
60
1.36
121204--121228
12
2.1
12
100
0
50
0
8
24
68
1.16
126685--126743
29
2.1
28
84
6
75
37
32
8
22
1.84
130050--130097
25
2.0
24
83
4
60
29
10
22
37
1.88
133720--133749
2
15.5
2
93
6
53
50
0
0
50
1.00

Tables:   1

The End!