genome.fa.s14058.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014058.1 Corchorus capsularis cultivar CVL-1 contig14079, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113586

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
984--1053	34	2.1	34	100	0	140	38	2	0	58	1.13
7596--7631	2	19.5	2	83	16	51	52	0	0	47	1.00
7596--7634	14	2.7	14	96	4	69	51	0	0	48	1.00
11147--11208	33	1.9	33	90	3	99	30	8	27	33	1.86
13549--13641	46	2.0	46	100	0	186	37	10	23	27	1.88
17822--17865	2	22.0	2	95	0	79	47	2	0	50	1.13
22776--23638	332	2.6	333	80	5	890	38	15	12	33	1.85
23702--26188	332	7.4	327	74	10	1436	37	14	13	33	1.86
29110--29143	15	2.1	17	89	10	54	52	2	0	44	1.16
29105--29154	15	2.8	18	74	25	52	52	2	2	44	1.24
29188--29249	30	2.0	31	90	3	99	43	4	1	50	1.33
36605--36645	20	2.0	20	100	0	82	19	14	19	46	1.84
39326--39351	13	2.0	13	100	0	52	23	0	23	53	1.46
42375--42733	181	2.0	176	92	2	592	26	12	13	47	1.79
47704--47731	13	2.2	13	100	0	56	35	0	35	28	1.58
52227--52308	42	2.0	42	97	0	155	40	17	4	37	1.71
52539--52587	25	2.0	25	84	15	66	32	36	26	4	1.75
52533--52667	16	8.5	16	76	9	116	32	36	21	9	1.86
53085--53157	13	5.8	13	68	12	53	32	8	1	57	1.37
53063--53134	37	1.9	37	94	0	126	30	6	1	61	1.31
54198--54969	413	1.9	413	82	4	975	31	12	13	42	1.81
56582--56615	17	2.0	18	88	11	54	17	0	20	61	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60390--60469	37	2.2	37	93	0	133	32	7	17	42	1.77
66694--66729	18	2.0	18	94	0	63	36	0	13	50	1.43
76650--76745	47	2.0	47	89	0	147	20	23	11	43	1.85
81368--81396	3	9.7	3	100	0	58	68	0	31	0	0.89
92617--92645	2	15.0	2	92	7	51	51	0	0	48	1.00
94767--94813	23	2.0	23	95	0	85	38	8	31	21	1.83
100784--100813	13	2.4	13	94	5	53	80	0	3	16	0.85
106266--106338	18	3.9	18	74	22	78	39	15	10	34	1.82
110173--110301	22	5.9	22	71	13	104	36	11	16	35	1.85
110174--110301	44	2.9	44	86	4	161	36	11	16	35	1.85
110387--110778	22	17.7	21	68	14	123	39	9	16	34	1.80
110926--111195	22	12.4	22	73	14	143	41	9	14	35	1.77
110902--111044	44	3.3	40	79	14	126	39	9	13	36	1.78
110883--111376	66	7.6	65	69	13	257	38	10	15	36	1.81
111010--111082	38	1.9	38	85	0	101	41	8	15	35	1.77
111049--111151	23	4.5	23	91	1	145	42	5	12	38	1.67
111049--111195	46	3.3	45	83	4	163	41	8	12	37	1.74
111239--111301	22	2.8	22	69	11	56	31	11	15	41	1.83
111358--111406	22	2.2	22	85	7	64	53	4	14	28	1.59
111568--111741	22	7.9	22	74	7	120	36	17	8	37	1.81
111808--112169	22	16.6	21	71	15	161	38	17	7	37	1.78
111760--111997	110	2.2	110	92	0	404	39	16	7	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111760--112060	110	2.7	110	85	4	340	38	15	8	36	1.78
111808--112169	44	8.3	44	72	10	192	38	17	7	37	1.78
112914--112949	19	1.9	18	88	5	54	41	2	22	33	1.68

Tables:   1

The End!