Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014060.1 Corchorus capsularis cultivar CVL-1 contig14081, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4193
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32


Found at i:1592 original size:14 final size:14

Alignment explanation


    Indices: 1573--1600  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

       1563 GGCCGATTAG

                          
       1573 AGGAGAAGTCGACT
          1 AGGAGAAGTCGACT

                          
       1587 AGGAGAAGTCGACT
          1 AGGAGAAGTCGACT

       1601 TTACAAGGAG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.36, C:0.14, G:0.36, T:0.14


Consensus pattern (14 bp):   
AGGAGAAGTCGACT
Done.