Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014061.1 Corchorus capsularis cultivar CVL-1 contig14082, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18578

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2932--2961
16
1.9
16
93
6
53
46
13
3
36
1.60
11568--11608
13
3.2
13
93
3
66
21
9
7
60
1.52
11605--11631
6
4.5
6
100
0
54
29
0
14
55
1.40
13033--13074
21
2.0
22
85
4
59
38
11
19
30
1.88
13112--13324
22
9.8
22
74
7
157
32
15
10
41
1.81
13245--13345
22
4.7
22
80
6
91
33
18
10
36
1.86
13162--13345
65
2.8
63
75
10
165
32
16
11
38
1.86
13370--13450
22
3.6
22
80
9
83
40
14
9
34
1.80
14811--14937
7
17.7
7
69
13
80
18
25
3
52
1.60
14811--14937
36
3.5
36
94
0
218
18
25
3
52
1.60
14893--14957
22
3.0
22
80
10
71
21
20
3
55
1.57
14947--15083
36
3.6
36
75
19
125
19
21
3
55
1.58
15008--15089
7
11.6
7
80
6
85
17
17
2
63
1.42
14996--15327
36
9.4
37
74
14
147
21
21
2
54
1.57
15084--15138
27
2.0
27
85
0
74
30
20
1
47
1.60
15124--15314
14
13.4
14
74
12
77
21
21
3
53
1.60
15160--15220
15
3.7
15
73
23
59
19
29
1
49
1.58
15189--15251
22
2.8
22
82
4
72
17
25
0
57
1.40
15138--15263
7
17.3
7
70
8
63
18
22
2
57
1.52
15322--15385
27
2.3
28
81
5
76
29
18
3
48
1.64

Tables:   1

The End!