Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014062.1 Corchorus capsularis cultivar CVL-1 contig14083, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5739

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--43
2
22.0
2
95
4
79
0
48
0
51
1.00
860--921
27
2.3
28
81
18
78
45
0
6
48
1.28
1394--1494
29
3.4
29
77
12
98
39
30
13
15
1.87
3273--3384
25
4.3
26
78
12
108
20
18
2
58
1.52
3336--3400
25
2.5
25
78
19
62
16
20
4
58
1.56
3410--3500
7
12.4
7
69
15
51
17
23
2
57
1.51
3395--3457
14
4.4
14
78
4
63
22
23
0
53
1.46
3416--3456
15
2.8
15
85
3
57
19
26
0
53
1.45
3410--3461
22
2.4
21
84
9
61
19
23
0
57
1.40
3430--3510
23
3.6
21
73
17
65
16
22
2
59
1.49
3416--3511
22
4.3
21
75
20
72
16
22
2
58
1.49
3431--3518
7
11.9
7
70
11
50
15
20
2
61
1.45
3555--3591
14
2.6
14
86
0
56
16
21
2
59
1.49
3547--3663
36
3.3
34
78
8
117
17
21
4
57
1.57
3690--3913
64
3.5
62
78
11
229
17
23
4
54
1.59
3791--3907
16
7.3
16
74
14
116
17
22
4
56
1.58
3750--3910
33
4.9
33
81
10
179
15
22
4
57
1.55
3791--3913
33
3.8
32
88
5
187
17
21
4
56
1.57

Tables:   1

The End!