Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014064.1 Corchorus capsularis cultivar CVL-1 contig14085, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47382

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5000--5045
21
2.2
21
84
0
56
10
28
30
30
1.91
6112--6139
6
4.7
6
100
0
56
53
14
0
32
1.41
6136--6169
12
2.7
13
95
4
61
61
8
8
20
1.52
6136--6175
12
3.2
12
86
6
53
62
10
7
20
1.50
11565--11598
17
2.0
17
100
0
68
41
5
11
41
1.66
11621--11696
7
10.7
7
77
2
62
59
1
19
19
1.45
11605--11696
21
4.4
20
78
11
87
59
2
17
20
1.47
11616--12000
42
9.1
41
73
15
148
54
3
22
20
1.59
11784--11973
22
8.9
22
82
10
225
53
4
21
20
1.64
11784--11973
64
3.0
64
84
6
226
53
4
21
20
1.64
11918--12007
7
12.7
7
83
2
81
58
1
21
18
1.45
11940--12017
21
3.7
21
85
0
93
58
2
21
16
1.49
11940--12007
14
4.9
14
88
0
91
60
1
22
16
1.44
12041--12098
27
2.1
29
84
12
77
56
3
22
17
1.55
12067--12177
42
2.6
43
77
7
111
52
6
17
24
1.67
14605--14629
12
2.1
12
100
0
50
24
28
8
40
1.83
17265--17342
32
2.4
32
93
0
129
50
5
25
19
1.68
17290--17342
16
3.3
16
75
19
65
54
3
22
18
1.59
17315--17423
40
2.7
40
94
0
182
54
2
21
22
1.58
17421--17454
16
2.1
17
88
5
52
58
2
20
17
1.51
17315--17439
40
3.2
39
88
7
166
53
3
21
21
1.60
17473--17561
32
3.0
31
71
20
98
52
5
16
24
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17514--17567
26
2.1
26
93
6
92
53
3
14
27
1.58
17569--17679
7
15.7
7
70
9
64
54
3
25
17
1.59
17552--17653
50
2.0
50
90
0
159
55
4
20
18
1.60
17562--17653
14
7.0
14
76
14
106
55
5
20
18
1.62
17555--17672
28
4.4
26
75
17
100
54
4
22
18
1.61
17633--17714
35
2.3
35
81
4
94
50
3
26
19
1.64
17702--17766
15
4.4
15
68
24
57
55
3
20
21
1.57
17732--17909
35
5.2
36
70
13
115
51
5
21
21
1.67
17676--17795
22
5.6
22
75
15
101
52
5
20
22
1.65
17807--17887
29
2.8
29
72
5
76
53
2
22
22
1.58
20937--21014
36
2.2
36
95
0
138
14
3
26
55
1.56
21111--21191
38
2.1
39
90
4
128
20
0
30
48
1.50
22806--22832
13
2.1
13
100
0
54
37
0
22
40
1.54
26983--27037
18
3.1
18
80
12
69
30
54
1
12
1.48
37510--37540
15
2.1
15
93
0
53
29
12
12
45
1.80
42749--42783
13
2.7
13
95
0
61
20
11
8
60
1.57
44095--44201
41
2.7
41
85
7
141
31
14
17
35
1.91
44750--44796
20
2.3
21
81
7
60
27
8
14
48
1.73
45166--45228
31
2.0
31
96
0
117
34
15
19
30
1.93
45922--46056
62
2.1
63
97
2
254
33
11
8
46
1.70
46795--46838
22
2.0
22
95
0
79
9
20
13
56
1.64

Tables:   1

The End!