Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014065.1 Corchorus capsularis cultivar CVL-1 contig14086, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79905

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2059--2119
19
3.4
16
68
23
50
50
6
16
26
1.69
2025--2155
38
3.5
37
85
7
140
48
6
16
27
1.71
2294--2371
40
1.9
41
92
7
133
51
7
16
24
1.71
2149--2427
74
3.9
69
82
8
283
50
5
17
25
1.68
2191--2388
34
5.6
34
72
17
129
50
6
16
26
1.69
2528--2556
15
1.9
15
100
0
58
41
6
24
27
1.80
2554--2650
7
13.3
7
68
12
52
58
3
19
18
1.52
2570--2707
28
4.6
29
71
15
100
56
5
19
18
1.61
2548--2725
65
2.7
64
91
1
275
56
5
19
19
1.61
2643--2707
29
2.3
28
86
2
94
55
7
20
16
1.65
2662--2729
29
2.3
30
84
2
84
54
5
20
19
1.64
2578--2768
94
2.0
93
81
5
215
53
5
20
19
1.64
2548--2778
65
3.6
63
85
5
232
54
5
20
19
1.63
2796--2953
31
4.9
32
82
14
175
56
4
18
19
1.58
2797--2914
63
1.9
59
90
10
184
55
3
19
22
1.58
2856--2938
35
2.4
36
90
6
127
62
3
18
15
1.46
7630--7707
39
2.0
39
92
5
131
37
17
24
20
1.94
15203--15240
15
2.4
16
82
4
51
26
2
13
57
1.49
31999--32152
69
2.2
70
87
3
213
35
12
1
50
1.48
34515--34570
29
2.0
29
82
3
69
33
3
3
58
1.32
40115--40139
13
1.9
13
100
0
50
76
0
16
8
1.02
52587--52695
56
1.9
56
86
0
155
36
18
9
35
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59422--59487
31
2.2
29
84
10
80
28
15
1
54
1.50
70614--70888
109
2.5
109
92
4
437
38
11
1
48
1.49
74992--75022
16
1.9
16
93
0
53
35
9
0
54
1.33
75614--76516
201
4.6
199
86
5
1084
35
17
12
35
1.87
75611--76517
396
2.3
389
83
7
1126
35
17
12
35
1.87

Tables:   1

The End!