Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014066.1 Corchorus capsularis cultivar CVL-1 contig14087, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  178136

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2211--2236
3
8.7
3
100
0
52
65
0
0
34
0.93
9828--10915
337
3.3
332
78
7
1119
33
14
16
35
1.89
10935--11960
335
3.1
330
79
6
1162
32
14
16
36
1.89
16569--16656
41
2.1
41
95
0
158
35
26
7
30
1.85
28136--28182
19
2.6
19
83
9
64
17
8
21
53
1.70
29632--29701
35
2.0
35
91
0
113
18
20
15
45
1.85
30537--30577
17
2.5
17
96
4
75
17
17
0
65
1.27
37720--37744
12
2.1
12
100
0
50
48
8
16
28
1.74
43591--43971
34
10.9
34
84
7
471
27
19
28
23
1.99
43607--43983
108
3.6
105
84
6
426
27
19
29
23
1.98
51905--51934
15
2.0
15
93
0
51
20
10
26
43
1.83
67442--67482
15
2.5
17
76
15
50
75
9
9
4
1.17
73134--73159
2
13.0
2
100
0
52
50
0
50
0
1.00
74511--74555
23
1.9
23
86
4
63
28
15
6
48
1.70
74549--74696
49
2.9
49
84
8
174
27
14
7
51
1.68
75288--75534
78
3.2
78
91
1
397
50
0
12
35
1.47
77029--77071
21
2.0
21
86
0
59
18
34
9
37
1.83
77427--77519
33
2.8
33
83
6
116
12
43
32
11
1.80
77567--77677
32
3.5
32
88
0
168
17
26
39
17
1.91
88134--88197
31
2.1
31
93
0
110
45
21
0
32
1.52
95986--96028
11
3.5
13
78
15
56
67
0
0
32
0.91
95975--96033
30
2.0
28
87
6
82
66
0
0
33
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95986--96030
23
1.9
24
95
4
83
66
0
0
33
0.92
95980--96033
11
4.5
13
72
23
55
68
0
0
31
0.90
96433--96885
167
2.7
166
83
5
547
39
15
15
29
1.88
106921--106954
13
2.6
13
85
0
50
47
5
0
47
1.26
106983--107022
19
2.1
19
100
0
80
32
5
5
57
1.42
119010--119049
2
20.0
2
100
0
80
50
0
50
0
1.00
126673--126703
15
2.1
15
100
0
62
29
25
6
38
1.81
140452--140493
18
2.1
21
87
12
63
4
21
2
71
1.16
149587--150195
215
2.8
213
88
3
857
28
17
14
39
1.88
150449--150528
31
2.6
31
100
0
160
37
12
6
43
1.68
151619--152102
126
3.9
126
84
3
615
37
16
14
31
1.89
156577--156607
2
15.5
2
100
0
62
48
0
0
51
1.00
157826--157873
24
2.1
23
88
7
71
22
12
18
45
1.83
164013--164077
21
3.2
20
82
10
87
26
9
23
41
1.84
164020--164078
19
3.0
19
83
9
82
25
10
22
42
1.84
165069--165108
3
14.0
3
87
10
57
35
0
2
62
1.09
169355--169394
14
2.7
15
88
7
55
0
32
2
65
1.06
169376--169412
11
3.3
11
88
3
56
0
37
0
62
0.96
171596--171674
30
2.6
30
95
0
140
26
3
30
39
1.74

Tables:   1

The End!