Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001407.1 Corchorus capsularis cultivar CVL-1 contig01407, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3810
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35


Found at i:1795 original size:31 final size:30

Alignment explanation


    Indices: 1760--1832  Score: 94
    Period size: 30  Copynumber: 2.4  Consensus size: 30

       1750 CGTTTGATGT

                    *     *                 
       1760 TATCCTGATTTGACCCAA-TCCGATAACGTTA
          1 TATCCTGAATTGACACAAGT-CG-TAACGTTA

                  *                       
       1791 TATCCTTAATTGACACAAGTCGTAACGTTA
          1 TATCCTGAATTGACACAAGTCGTAACGTTA

                        
       1821 TATCCTGAATTG
          1 TATCCTGAATTG

       1833 CATTTTTGTG


Statistics
Matches: 37,  Mismatches: 4, Indels: 3
        0.84            0.09        0.07

Matches are distributed among these distances:
  30   19  0.51
  31   17  0.46
  32    1  0.03

ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34


Consensus pattern (30 bp):   
TATCCTGAATTGACACAAGTCGTAACGTTA
Done.