Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014072.1 Corchorus capsularis cultivar CVL-1 contig14093, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52699

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
931--1037
31
3.6
29
83
7
117
18
28
15
37
1.92
1107--1145
16
2.3
18
86
8
55
17
0
2
79
0.84
1225--1254
3
10.0
3
100
0
60
33
0
0
66
0.92
2360--2388
4
7.2
4
100
0
58
51
24
0
24
1.48
3564--3663
31
3.3
30
76
5
94
36
16
27
21
1.94
4371--4420
24
2.1
24
96
0
91
46
24
16
14
1.83
4569--4618
24
2.1
24
96
0
91
46
24
16
14
1.83
4319--4714
198
2.0
198
100
0
792
38
21
11
28
1.88
5378--5513
68
2.0
68
100
0
272
22
22
23
32
1.98
6511--6536
6
4.3
6
100
0
52
15
0
34
50
1.45
16930--17061
33
4.0
33
95
0
246
25
24
22
27
2.00
22326--22353
1
28.0
1
100
0
56
0
0
0
100
0.00
24497--24623
65
2.0
65
98
0
245
41
18
11
29
1.84
28983--29238
132
1.9
132
87
1
370
30
23
19
27
1.98
35978--36041
31
2.1
31
85
5
87
43
10
21
23
1.84
37342--37394
17
3.1
17
75
0
52
37
16
18
26
1.93
46666--46702
15
2.2
18
86
13
53
54
2
0
43
1.14
46681--46768
24
3.7
24
73
19
94
52
1
5
40
1.33
46682--46781
24
4.3
22
75
17
78
53
3
6
38
1.41
46962--46994
6
5.5
6
100
0
66
66
0
15
18
1.25
47186--47245
29
2.1
29
90
0
93
45
20
3
31
1.67

Tables:   1

The End!