Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014074.1 Corchorus capsularis cultivar CVL-1 contig14095, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3223

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1019--1083
31
2.1
31
88
2
96
29
18
4
47
1.68
1025--1090
31
2.1
31
86
5
89
33
15
4
46
1.66
1197--1280
44
1.9
44
90
4
134
35
13
15
35
1.86
1173--1334
22
7.3
22
80
6
121
31
9
19
38
1.85
1398--1740
22
15.4
22
67
19
117
40
9
14
35
1.79
1588--1626
21
2.0
19
85
14
53
46
5
7
41
1.55
1547--1760
44
4.8
44
74
9
159
41
9
12
35
1.76
1612--1760
66
2.3
66
80
2
165
41
10
12
35
1.77
1619--1785
88
1.9
88
82
4
212
42
10
11
34
1.77
1514--1760
22
11.3
22
72
13
140
42
9
13
34
1.77
1864--1930
19
3.4
19
86
10
89
43
13
20
22
1.87
1864--1933
21
3.4
21
88
7
92
42
14
20
22
1.88
1921--2480
22
25.7
22
66
13
119
38
9
14
36
1.79
2112--2215
23
4.6
23
79
3
95
38
7
13
40
1.73
2265--2350
45
1.9
45
83
4
111
33
11
16
38
1.85
2640--2704
31
2.1
31
94
2
114
30
20
3
46
1.66
2829--2919
38
2.4
37
75
7
94
15
20
10
52
1.72
2973--3033
22
2.8
22
79
13
65
45
11
4
37
1.62
3046--3088
23
2.0
22
86
9
61
46
2
16
34
1.60

Tables:   1

The End!