Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014075.1 Corchorus capsularis cultivar CVL-1 contig14096, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67242

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98--165
23
3.0
23
77
10
68
30
10
19
39
1.85
317--413
22
4.6
22
66
14
69
41
10
12
36
1.77
259--413
62
2.5
62
93
3
256
43
9
14
32
1.78
5531--5592
31
2.0
31
81
9
74
29
16
25
29
1.96
14198--14268
30
2.3
32
80
4
83
39
7
23
29
1.81
14982--15093
16
7.1
16
80
6
129
8
20
36
34
1.82
15563--15610
21
2.3
21
88
0
78
56
6
8
29
1.53
15715--15769
16
3.4
16
76
0
56
10
20
36
32
1.87
15725--15835
16
6.9
16
75
7
75
10
18
37
32
1.86
15727--15835
32
3.4
30
74
9
92
10
19
38
32
1.85
15872--15917
17
2.7
18
76
10
60
10
15
47
26
1.78
15937--16236
107
2.8
107
95
1
541
42
9
9
39
1.69
23158--23979
423
1.9
429
83
6
1070
40
14
14
30
1.85
28065--28299
108
2.2
105
88
2
335
42
7
9
41
1.65
30141--30213
32
2.3
32
83
7
94
31
27
10
30
1.91
39675--39729
21
2.7
21
73
18
53
16
7
0
76
1.00
42395--42517
44
2.8
43
85
4
149
37
10
14
37
1.81
42390--42590
22
9.0
22
69
14
110
34
9
17
38
1.82
42483--42603
22
5.4
22
69
7
64
35
7
17
39
1.78
42694--42930
22
10.5
22
70
13
117
39
9
15
35
1.79
43137--43192
22
2.6
22
83
5
71
44
10
12
32
1.77
43335--43588
22
11.7
22
67
18
88
40
10
14
35
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43463--43542
23
3.5
23
89
1
108
36
7
17
38
1.78
43531--43599
22
3.1
22
83
4
86
39
11
11
37
1.78
43551--43608
22
2.6
23
84
13
77
37
12
12
37
1.80
43691--43862
22
7.8
22
70
10
84
41
10
15
32
1.81
43830--43877
22
2.2
22
85
7
62
45
10
14
29
1.78
48984--49033
25
2.0
26
92
4
84
40
4
4
52
1.39
61928--61960
17
1.9
17
93
0
57
24
6
39
30
1.79
63518--63579
21
3.1
20
84
6
81
33
17
0
48
1.48

Tables:   1

The End!