Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014078.1 Corchorus capsularis cultivar CVL-1 contig14099, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46321

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30--181
33
4.6
33
89
4
218
13
33
42
11
1.79
1365--1399
14
2.4
15
90
4
54
0
11
25
62
1.28
1470--1506
11
3.1
12
92
7
58
0
10
32
56
1.34
2252--2283
8
4.0
8
95
0
55
84
0
15
0
0.63
2887--2916
14
2.1
15
93
6
53
83
6
10
0
0.81
5746--5782
20
2.0
20
84
10
51
29
5
5
59
1.42
13430--13475
23
2.0
23
91
0
74
41
2
10
45
1.51
23046--23088
21
2.2
19
87
8
59
44
11
11
32
1.77
23787--23845
6
9.5
6
72
20
50
77
3
18
0
0.90
28716--28905
101
1.9
99
87
2
281
43
10
7
37
1.68
30432--30469
19
2.0
20
85
15
53
28
5
2
63
1.30
30633--30773
22
6.3
22
76
11
124
32
8
19
39
1.82
30631--30774
69
2.1
67
82
6
166
32
8
20
38
1.82
30809--30948
22
6.4
20
72
14
84
36
7
20
36
1.80
30809--30948
44
3.2
43
74
10
115
36
7
20
36
1.80
30971--31138
22
7.6
22
71
16
107
42
10
12
34
1.78
30971--31070
21
4.5
22
76
13
98
44
9
13
34
1.75
31121--31176
22
2.6
22
77
2
60
41
8
14
35
1.77
31256--31466
22
9.7
22
69
10
112
42
8
15
34
1.77
31560--31606
22
2.1
22
92
0
76
34
12
14
38
1.85
31560--31615
22
2.5
23
83
13
73
35
14
12
37
1.84
31756--31804
22
2.2
22
85
0
62
55
0
14
30
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35948--36231
139
2.0
139
97
0
541
31
13
5
49
1.64
36150--36318
78
2.2
78
89
4
252
37
11
0
50
1.42
37020--37078
31
1.9
31
85
0
82
32
15
13
38
1.86
44259--44301
22
1.9
23
90
4
70
32
13
20
32
1.92

Tables:   1

The End!