Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001408.1 Corchorus capsularis cultivar CVL-1 contig01408, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5763
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35


Found at i:1576 original size:38 final size:38

Alignment explanation


    Indices: 1525--1599  Score: 150
    Period size: 38  Copynumber: 2.0  Consensus size: 38

       1515 TGAACGCCTT

                                                  
       1525 ATTGTATTGTATGTATTTGTTGACACGTTAGATTTTGA
          1 ATTGTATTGTATGTATTTGTTGACACGTTAGATTTTGA

                                                 
       1563 ATTGTATTGTATGTATTTGTTGACACGTTAGATTTTG
          1 ATTGTATTGTATGTATTTGTTGACACGTTAGATTTTG

       1600 CAAAACAAAG


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  38   37  1.00

ACGTcount: A:0.23, C:0.05, G:0.21, T:0.51


Consensus pattern (38 bp):   
ATTGTATTGTATGTATTTGTTGACACGTTAGATTTTGA
Done.