Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014081.1 Corchorus capsularis cultivar CVL-1 contig14102, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24685

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43--82
2
19.5
2
94
5
71
50
2
0
47
1.14
2985--3031
22
2.3
20
85
10
60
40
23
17
19
1.91
2951--3053
53
1.9
53
86
0
143
34
26
21
17
1.95
3003--3083
31
2.6
31
80
0
99
34
25
20
18
1.96
7934--7986
24
2.1
26
89
6
83
33
5
13
47
1.66
8650--8904
22
11.8
22
70
14
133
34
15
9
40
1.81
8650--8756
23
4.7
23
80
4
103
35
15
10
38
1.82
8650--8904
45
5.9
44
72
16
158
34
15
9
40
1.81
8908--8947
19
2.0
20
85
4
55
25
20
10
45
1.81
9057--9181
22
5.7
22
76
9
94
32
14
10
42
1.79
9143--9224
22
3.8
21
78
9
76
34
13
10
41
1.79
9309--9363
22
2.5
23
82
11
71
38
16
5
40
1.72
9324--9374
22
2.3
22
82
0
66
41
19
7
31
1.80
9380--9438
22
2.7
22
79
10
66
35
16
10
37
1.83
9511--9613
22
4.6
22
71
11
84
35
17
8
37
1.81
9779--9816
19
2.0
20
85
15
53
63
2
5
28
1.30
9955--10030
38
2.1
35
87
7
107
57
11
17
13
1.64
11527--11770
120
2.0
120
100
0
488
28
13
20
38
1.90
17744--17854
31
3.9
30
71
20
87
17
19
26
36
1.94
18800--18855
29
1.9
29
85
7
78
53
7
19
19
1.68
21100--22396
199
6.5
199
87
3
1754
34
13
17
34
1.89
21100--22396
593
2.2
594
87
4
1880
34
13
17
34
1.89

Tables:   1

The End!