genome.fa.s14082.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014082.1 Corchorus capsularis cultivar CVL-1 contig14103, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71971

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1780--1831	24	2.1	25	89	3	79	40	21	19	19	1.92
10095--10134	3	13.3	3	100	0	80	67	0	0	32	0.91
11014--11049	11	3.3	11	92	7	56	44	2	5	47	1.41
12276--12310	17	2.1	17	89	10	54	77	0	22	0	0.78
26718--26755	18	2.1	19	95	5	69	7	36	0	55	1.29
27721--27781	32	1.9	32	86	3	88	22	9	29	37	1.87
27735--27811	32	2.4	32	86	4	102	15	9	35	40	1.79
36142--36199	24	2.8	19	71	24	55	50	3	10	36	1.54
37449--37475	14	1.9	14	100	0	54	48	14	0	37	1.45
37562--37600	18	2.1	19	86	13	55	35	0	0	64	0.94
38275--38301	6	4.5	6	100	0	54	0	0	29	70	0.88
39139--39193	16	3.4	16	82	0	56	14	21	34	29	1.93
46817--46863	21	2.2	22	81	11	62	48	4	12	34	1.61
51040--51073	2	16.5	2	87	6	50	0	47	2	50	1.16
55371--55419	25	2.0	24	96	4	89	28	20	12	38	1.89
61330--61438	22	5.1	22	68	18	79	30	10	11	47	1.73
61283--61437	62	2.5	62	91	0	238	33	10	10	45	1.72
61465--61510	22	2.0	22	87	8	65	32	13	4	50	1.61
61539--61943	22	18.7	22	70	12	167	36	14	9	39	1.78
61539--61943	44	9.3	43	70	13	190	36	14	9	39	1.78
62038--62166	22	5.9	22	80	1	134	32	13	10	43	1.78
62038--62181	44	3.3	44	79	8	161	32	13	10	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62063--62181	22	5.4	21	72	13	89	32	14	9	43	1.77
62450--62516	31	2.1	32	83	10	93	49	4	14	31	1.64
62457--62522	31	2.1	31	88	5	98	50	4	18	27	1.66
67356--67402	18	2.6	18	89	0	67	27	12	29	29	1.93
67374--67410	18	2.1	18	89	0	56	32	18	18	29	1.96
67993--68049	29	2.0	28	86	3	78	24	17	15	42	1.88
68741--68796	27	2.1	27	86	0	76	51	14	10	23	1.73
71797--71840	14	2.9	15	83	13	54	15	29	2	52	1.55

Tables:   1

The End!