genome.fa.s14083.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014083.1 Corchorus capsularis cultivar CVL-1 contig14104, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53195

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6--74	32	2.2	32	84	5	86	13	43	33	10	1.77
89--178	34	2.7	34	89	3	139	13	33	37	15	1.86
6475--6509	5	7.0	5	93	0	61	60	37	0	2	1.12
8433--8484	24	2.2	23	80	16	61	40	5	1	51	1.37
9454--10493	316	3.2	319	81	7	1173	38	10	13	37	1.79
21777--21821	21	2.1	21	95	0	81	28	26	11	33	1.91
25068--25125	29	2.0	29	100	0	116	24	13	24	37	1.91
32379--32437	25	2.4	25	100	0	118	23	13	6	55	1.62
32524--32548	9	2.8	9	100	0	50	24	0	20	56	1.43
37809--37942	46	2.9	46	100	0	268	35	6	26	32	1.82
38942--39009	13	5.5	13	74	10	61	33	17	14	33	1.91
39215--39251	2	18.5	2	94	0	65	48	2	0	48	1.15
40082--40132	26	1.9	27	88	4	77	33	29	9	27	1.89
40937--40968	2	16.0	2	100	0	64	50	0	0	50	1.00
41875--42011	46	3.0	46	85	0	175	30	16	20	32	1.95
42156--42276	36	3.4	36	86	2	154	25	21	24	28	1.99
42884--43007	17	6.9	17	81	12	149	29	21	28	20	1.98
42867--43007	37	3.9	38	92	4	222	28	21	29	21	1.98
42993--43185	92	2.1	91	87	5	275	26	15	27	30	1.96
42978--43303	45	7.2	45	73	7	230	27	15	26	30	1.96
43790--43950	65	2.6	65	83	6	199	25	16	25	32	1.96
43861--43938	29	2.6	31	74	12	90	28	14	23	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43812--43926	29	3.7	29	71	20	88	28	15	27	27	1.96
43957--44193	110	2.2	111	87	6	342	32	21	23	22	1.98
44570--44605	18	2.0	18	88	0	54	19	30	19	30	1.96
45116--45203	46	1.9	46	100	0	176	35	6	26	31	1.83

Tables:   1

The End!