Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014084.1 Corchorus capsularis cultivar CVL-1 contig14105, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117664

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3592--3689
48
2.0
48
100
0
196
14
10
34
40
1.79
3666--3882
69
3.1
69
91
0
353
18
22
31
27
1.97
14283--14343
26
2.3
26
100
0
122
27
6
19
45
1.75
20019--20087
31
2.2
31
94
0
120
27
17
7
47
1.73
21775--21822
21
2.4
19
80
13
51
35
12
8
43
1.73
27666--27702
18
2.1
18
94
0
65
32
13
16
37
1.87
27731--27767
17
2.2
17
100
0
74
37
16
8
37
1.78
34972--35012
1
41.0
1
100
0
82
100
0
0
0
0.00
37662--37700
20
2.0
19
85
5
51
53
10
20
15
1.70
56367--56880
267
1.9
267
93
1
897
35
10
15
39
1.81
58714--58792
30
2.6
30
93
0
131
17
26
7
48
1.74
58992--59020
2
15.0
2
92
7
51
48
0
0
51
1.00
70281--70433
60
2.5
60
83
6
168
33
13
18
33
1.91
76761--76811
20
2.5
21
80
6
68
54
13
3
27
1.56
78219--78303
16
5.4
16
78
5
102
29
7
15
48
1.71
78239--78293
15
3.6
15
85
4
83
32
1
16
49
1.56
78220--78303
31
2.7
31
96
0
150
29
5
15
48
1.68
78282--78492
83
2.5
83
93
1
343
27
15
11
45
1.80
80891--81200
73
4.2
75
83
2
365
30
15
17
36
1.91
81175--81225
25
2.0
25
100
0
102
27
15
9
47
1.77
81047--81375
175
1.9
176
89
0
516
31
16
15
37
1.90
81201--81439
75
3.2
76
84
2
304
32
15
14
37
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82188--82295
16
6.9
16
74
11
91
6
21
37
34
1.79
82188--82295
31
3.5
30
81
7
110
6
21
37
34
1.79
82249--82310
7
7.9
8
75
21
60
3
24
40
32
1.71
82250--82310
16
3.8
16
81
12
72
3
24
40
31
1.71
82206--82310
32
3.3
32
75
11
110
6
21
40
31
1.79
82756--82803
21
2.3
21
85
0
69
56
8
8
27
1.57
82887--83023
48
2.9
48
81
8
145
8
19
37
33
1.83
82888--83006
32
3.7
31
84
3
139
10
18
37
33
1.84
82887--82999
16
7.1
16
78
11
124
9
17
37
35
1.83
82888--83023
32
4.3
31
80
10
132
8
19
38
33
1.83
83065--83102
17
2.2
18
90
4
60
7
15
52
23
1.69
84205--84538
149
2.3
145
85
3
445
35
17
15
31
1.91
84205--84538
75
4.5
74
84
2
390
35
17
15
31
1.91
85872--85897
10
2.6
10
100
0
52
23
7
19
50
1.73
93564--93606
20
2.0
20
86
8
59
62
4
6
25
1.40
96124--96177
16
3.4
16
100
0
108
18
38
11
31
1.86
99526--99574
21
2.3
21
82
6
55
40
16
28
14
1.87
109918--109956
18
2.1
19
90
4
62
43
0
20
35
1.52
115263--115324
32
1.9
32
83
0
79
50
16
8
25
1.72

Tables:   1

The End!