Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014085.1 Corchorus capsularis cultivar CVL-1 contig14106, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3188
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.34


Found at i:186 original size:32 final size:32

Alignment explanation


    Indices: 127--188  Score: 79
    Period size: 32  Copynumber: 1.9  Consensus size: 32

        117 AGTATATCCC

                    *   *       *           
        127 AAACATAAGTAATAAGCCCAGTCCTAAATTGT
          1 AAACATAAATAAAAAGCCCAATCCTAAATTGT

                             *    *       
        159 AAACATAAATAAAAAGCTCAATTCTAAATT
          1 AAACATAAATAAAAAGCCCAATCCTAAATT

        189 CTAATTAACT


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  32   25  1.00

ACGTcount: A:0.50, C:0.16, G:0.08, T:0.26


Consensus pattern (32 bp):   
AAACATAAATAAAAAGCCCAATCCTAAATTGT
Done.