genome.fa.s14092.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014092.1 Corchorus capsularis cultivar CVL-1 contig14113, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50505

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187--241	16	3.4	16	71	14	58	21	20	9	49	1.76
175--243	33	2.1	33	97	0	129	18	17	10	53	1.71
3959--4086	54	2.4	53	84	2	166	57	7	20	15	1.62
3958--4086	27	4.9	25	76	12	116	57	6	20	15	1.61
4161--4297	36	3.9	35	72	9	118	53	4	23	18	1.63
4161--4344	35	5.1	34	73	12	136	53	4	22	19	1.64
4226--4533	40	7.6	39	70	15	130	53	3	23	19	1.61
4323--4447	20	6.1	19	75	10	88	48	4	24	23	1.67
4365--4455	22	4.2	22	83	8	100	50	3	26	19	1.63
4425--4529	14	7.4	14	76	12	106	55	3	23	17	1.58
4417--4529	7	15.7	7	72	4	82	55	3	23	16	1.57
4363--4455	44	2.2	42	84	11	118	50	3	25	20	1.63
4399--4514	22	5.3	22	74	8	85	55	2	24	18	1.55
4416--4529	29	3.9	29	88	2	167	56	3	23	16	1.56
4416--4600	58	3.0	58	81	10	201	57	3	23	16	1.54
4609--4695	21	4.1	21	70	12	70	55	4	17	22	1.60
4589--4681	42	2.2	43	80	5	109	52	4	21	21	1.64
5289--5319	1	31.0	1	100	0	62	0	0	0	100	0.00
5404--5460	28	2.0	29	83	10	73	40	22	5	31	1.76
7307--7331	2	12.5	2	100	0	50	48	0	0	52	1.00
7797--7841	21	2.1	21	83	4	54	20	37	8	33	1.83
7911--7969	25	2.4	25	91	5	95	35	23	0	40	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7979--8046	26	2.6	26	95	0	118	54	10	0	35	1.35
7979--8023	15	3.3	15	76	23	62	53	11	0	35	1.37
9784--9826	12	3.6	12	93	0	68	67	6	13	11	1.41
9784--9826	6	7.2	6	83	0	59	67	6	13	11	1.41
12044--12080	18	2.1	18	89	0	56	64	2	0	32	1.07
12047--12102	25	2.2	27	84	9	73	62	5	1	30	1.28
13058--13106	24	2.0	24	100	0	98	36	14	8	40	1.75
19718--19784	33	2.0	33	94	0	116	25	38	25	10	1.87
19704--19800	33	3.1	32	81	11	105	25	39	25	9	1.86
20806--20832	7	3.9	7	100	0	54	88	0	0	11	0.50
24958--25131	84	2.1	84	95	2	314	29	16	26	28	1.97
26342--26409	30	2.3	30	85	10	86	23	35	27	13	1.92
29992--30039	20	2.3	21	85	3	62	68	6	6	18	1.32
39838--39875	5	7.2	5	94	5	58	36	0	18	44	1.50
39838--39875	17	2.4	16	87	12	60	36	0	18	44	1.50
41159--41191	6	5.5	6	100	0	66	0	15	0	84	0.61
44577--44715	18	7.8	18	76	4	102	25	40	21	12	1.89
44571--44715	54	2.7	54	80	2	139	25	41	20	12	1.87
45992--46095	15	6.9	15	68	16	72	30	30	25	12	1.93
45992--46095	30	3.5	30	71	8	86	30	30	25	12	1.93
45928--46110	75	2.4	75	94	1	314	31	26	27	14	1.95
46052--46106	15	3.7	15	76	13	60	27	30	27	14	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46049--46106	30	1.9	30	83	13	75	29	29	27	13	1.94
47510--47534	10	2.5	10	100	0	50	24	8	20	48	1.76

Tables:   1

The End!