Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014096.1 Corchorus capsularis cultivar CVL-1 contig14117, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5656
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:2765 original size:28 final size:26

Alignment explanation


    Indices: 2729--2786  Score: 73
    Period size: 28  Copynumber: 2.2  Consensus size: 26

       2719 AAGAGACATT

                         *               
       2729 TTTTCAAAAAAT-TGTTTTCAAGAAAAGA
          1 TTTTC-AAAAATGAGTTTTC-A-AAAAGA

                                      
       2757 TTTTCAAAAATGAGTTTTCAAAAAGA
          1 TTTTCAAAAATGAGTTTTCAAAAAGA

                
       2783 TTTT
          1 TTTT

       2787 GAGCTTTTAA


Statistics
Matches: 28,  Mismatches: 1, Indels: 4
        0.85            0.03        0.12

Matches are distributed among these distances:
  26   10  0.36
  27    7  0.25
  28   11  0.39

ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40


Consensus pattern (26 bp):   
TTTTCAAAAATGAGTTTTCAAAAAGA
Done.