Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014097.1 Corchorus capsularis cultivar CVL-1 contig14118, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5140

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
311--1057
36
21.1
36
82
6
837
55
4
21
19
1.60
420--894
29
16.6
28
66
18
149
56
3
20
19
1.57
424--806
22
17.5
23
69
19
105
55
3
21
19
1.58
311--1057
107
7.0
107
80
6
795
55
4
21
19
1.60
311--1049
143
5.2
143
92
1
1152
55
4
21
19
1.60
489--1057
21
27.5
21
68
13
245
56
3
20
19
1.56
1087--1147
24
2.5
25
77
15
74
50
3
19
26
1.63
1162--1226
24
2.7
24
81
15
80
58
3
16
21
1.52
1214--1283
26
2.8
26
89
4
99
54
7
18
20
1.67
1243--1326
43
2.0
43
86
9
118
46
4
22
26
1.71
1286--1353
26
2.6
27
86
9
88
54
1
22
22
1.53
1335--1365
15
2.1
15
93
0
53
64
0
16
19
1.29
2689--2753
33
2.0
33
93
0
112
23
12
6
58
1.56
3187--3325
41
3.4
41
79
8
167
12
10
23
53
1.69
3187--3325
40
3.4
40
73
17
106
12
10
23
53
1.69
4146--4175
2
15.0
2
100
0
60
50
0
0
50
1.00
4364--4517
55
2.8
55
98
0
299
29
9
21
39
1.84

Tables:   1

The End!