Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014098.1 Corchorus capsularis cultivar CVL-1 contig14119, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14375
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33


Found at i:3203 original size:15 final size:15

Alignment explanation


    Indices: 3185--3215  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       3175 TTTAAGTTTC

                           
       3185 AGGGACTTAATTGAA
          1 AGGGACTTAATTGAA

                     *     
       3200 AGGGACTTATTTGAA
          1 AGGGACTTAATTGAA

             
       3215 A
          1 A

       3216 AGAAATTAAA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.39, C:0.06, G:0.26, T:0.29


Consensus pattern (15 bp):   
AGGGACTTAATTGAA

Found at i:9695 original size:21 final size:21

Alignment explanation


    Indices: 9671--9724  Score: 72
    Period size: 21  Copynumber: 2.6  Consensus size: 21

       9661 GCAGCTCCTT

                                 
       9671 CTTCTTCTTCTTTCTCACTTC
          1 CTTCTTCTTCTTTCTCACTTC

                   *  *         *
       9692 CTTCTTCCTCGTTCTCACTTT
          1 CTTCTTCTTCTTTCTCACTTC

                  *     
       9713 CTTCTTTTTCTT
          1 CTTCTTCTTCTT

       9725 CTTCATCAGA


Statistics
Matches: 27,  Mismatches: 6, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  21   27  1.00

ACGTcount: A:0.04, C:0.35, G:0.02, T:0.59


Consensus pattern (21 bp):   
CTTCTTCTTCTTTCTCACTTC
Done.