Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014099.1 Corchorus capsularis cultivar CVL-1 contig14120, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2206
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.31


Found at i:1622 original size:27 final size:27

Alignment explanation


    Indices: 1592--1660  Score: 113
    Period size: 27  Copynumber: 2.6  Consensus size: 27

       1582 GCCCAAGGCT

                                        
       1592 ATTTTGGTCATTTTTGCA-TCCAGGGGC
          1 ATTTTGGTCATTTTTGCACT-CAGGGGC

                                       
       1619 ATTTTGGTCATTTTTGCACTCAGGGGC
          1 ATTTTGGTCATTTTTGCACTCAGGGGC

                 *         
       1646 ATTTTAGTCATTTTT
          1 ATTTTGGTCATTTTT

       1661 AAGTTCACCT


Statistics
Matches: 40,  Mismatches: 1, Indels: 2
        0.93            0.02        0.05

Matches are distributed among these distances:
  27   39  0.98
  28    1  0.03

ACGTcount: A:0.16, C:0.16, G:0.22, T:0.46


Consensus pattern (27 bp):   
ATTTTGGTCATTTTTGCACTCAGGGGC

Found at i:2131 original size:13 final size:13

Alignment explanation


    Indices: 2113--2137  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       2103 AAAGTTTGAA

                         
       2113 AATACAAAAAAAT
          1 AATACAAAAAAAT

                        
       2126 AATACAAAAAAA
          1 AATACAAAAAAA

       2138 AAGAGAGAAC


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.80, C:0.08, G:0.00, T:0.12


Consensus pattern (13 bp):   
AATACAAAAAAAT
Done.