Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014107.1 Corchorus capsularis cultivar CVL-1 contig14128, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6363
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.32


Found at i:36 original size:13 final size:12

Alignment explanation


    Indices: 7--35  Score: 58
    Period size: 12  Copynumber: 2.4  Consensus size: 12

          1 GGCGTC

                        
          7 TTTTTATTTTTT
          1 TTTTTATTTTTT

                        
         19 TTTTTATTTTTT
          1 TTTTTATTTTTT

                 
         31 TTTTT
          1 TTTTT

         36 TTAGCTTTCC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.07, C:0.00, G:0.00, T:0.93


Consensus pattern (12 bp):   
TTTTTATTTTTT

Found at i:4323 original size:6 final size:6

Alignment explanation


    Indices: 4285--4320  Score: 63
    Period size: 6  Copynumber: 6.0  Consensus size: 6

       4275 TCCAAATAGA

                                               *     
       4285 ACAAAT ACAAAT ACAAAT ACAAAT ACAAAT GCAAAT
          1 ACAAAT ACAAAT ACAAAT ACAAAT ACAAAT ACAAAT

       4321 GCATGCAATG


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   6   29  1.00

ACGTcount: A:0.64, C:0.17, G:0.03, T:0.17


Consensus pattern (6 bp):   
ACAAAT
Done.