Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014110.1 Corchorus capsularis cultivar CVL-1 contig14131, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88659

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2173--2199
13
2.1
13
100
0
54
0
37
0
62
0.95
2691--2804
55
2.0
57
93
3
196
35
14
10
40
1.80
5694--5756
31
2.1
30
82
11
76
39
7
19
33
1.80
15321--15345
6
4.2
6
100
0
50
16
0
0
84
0.63
28581--28610
15
2.0
15
93
0
51
56
6
20
16
1.62
33713--33757
21
2.1
21
87
0
63
55
2
37
4
1.32
38707--38842
36
3.8
36
89
0
209
27
19
6
46
1.75
38862--39091
73
3.2
73
86
3
304
26
13
12
47
1.79
38862--39126
36
7.3
37
85
5
294
26
14
12
46
1.81
38707--39130
36
11.9
35
80
7
208
25
17
10
45
1.81
44135--44168
16
2.2
16
89
5
52
29
2
8
58
1.43
50113--50140
14
2.0
14
100
0
56
35
14
35
14
1.86
51181--51244
32
2.0
33
81
9
78
15
9
6
68
1.36
52755--52790
19
1.9
18
88
5
54
41
2
22
33
1.68
54070--54101
13
2.4
14
85
15
50
28
6
12
53
1.62
54721--54747
12
2.2
12
100
0
54
7
0
37
55
1.28
72138--72256
36
3.4
35
76
17
131
29
16
6
47
1.73
72159--72271
32
3.4
32
75
17
113
29
18
5
46
1.71
72270--72827
35
15.8
35
82
5
637
25
22
9
41
1.84
72270--72818
106
5.2
104
83
5
647
26
22
9
41
1.84
72270--72821
141
3.9
136
85
8
664
26
22
9
41
1.85
72912--73214
36
8.7
35
81
10
356
29
10
12
46
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72981--73032
27
1.9
27
88
0
77
34
7
9
48
1.65
72940--73180
71
3.6
64
87
8
263
30
11
12
46
1.76
73006--73214
71
2.9
71
90
3
323
29
11
12
46
1.77
73008--73214
107
1.9
107
88
3
310
29
11
13
46
1.77
73227--73479
36
6.9
37
77
12
172
24
22
7
45
1.78
73189--73556
74
5.0
73
81
9
378
24
21
8
45
1.80
73253--73553
36
8.3
35
78
11
268
24
22
8
44
1.81
73247--73556
70
4.3
72
83
7
369
24
22
8
44
1.81
73601--73709
40
2.7
39
81
5
137
27
14
8
49
1.72
73601--73747
40
3.7
40
77
8
113
27
14
9
48
1.74
79346--79373
6
4.7
6
100
0
56
85
0
0
14
0.59

Tables:   1

The End!