Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01014128.1 Corchorus capsularis cultivar CVL-1 contig14149, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60100
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Found at i:1114 original size:31 final size:32
Alignment explanation
Indices: 1069--1130 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
1059 GCAATTTTTG
*
1069 AGAGCAAGGCCGATTGGAAG-AG-AAGTCGACT
1 AGAGCAAAGCCGATT-GAAGAAGCAAGTCGACT
*
1100 AGAGCAAAGTCGATTGAAGAAGCAAGTCGAC
1 AGAGCAAAGCCGATTGAAGAAGCAAGTCGAC
1131 AAGGAAGTCG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 4 0.15
31 15 0.56
32 8 0.30
ACGTcount: A:0.39, C:0.16, G:0.32, T:0.13
Consensus pattern (32 bp):
AGAGCAAAGCCGATTGAAGAAGCAAGTCGACT
Found at i:2929 original size:1 final size:1
Alignment explanation
Indices: 2923--2956 Score: 68
Period size: 1 Copynumber: 34.0 Consensus size: 1
2913 TATTTTCTGT
2923 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
2957 CCTCCATTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:9853 original size:12 final size:12
Alignment explanation
Indices: 9838--9898 Score: 50
Period size: 12 Copynumber: 4.8 Consensus size: 12
9828 ACACACACAC
9838 ATATATATATCT
1 ATATATATATCT
* *
9850 ATATCTATGTACCT
1 ATA--TATATATCT
* *
9864 ATATCTATACCT
1 ATATATATATCT
*
9876 ATATCTATATCT
1 ATATATATATCT
9888 ATATACTATAT
1 ATATA-TATAT
9899 AAGTCTAAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
12 25 0.62
13 5 0.12
14 10 0.25
ACGTcount: A:0.36, C:0.16, G:0.02, T:0.46
Consensus pattern (12 bp):
ATATATATATCT
Found at i:9867 original size:14 final size:13
Alignment explanation
Indices: 9848--9896 Score: 57
Period size: 12 Copynumber: 3.8 Consensus size: 13
9838 ATATATATAT
9848 CTATATCTATGTAC
1 CTATATCTAT-TAC
9862 CTATATCTA-TAC
1 CTATATCTATTAC
*
9874 CTATATCTA-TAT
1 CTATATCTATTAC
9886 CTATATACTAT
1 CTATAT-CTAT
9897 ATAAGTCTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 20 0.62
13 3 0.09
14 9 0.28
ACGTcount: A:0.33, C:0.20, G:0.02, T:0.45
Consensus pattern (13 bp):
CTATATCTATTAC
Found at i:17224 original size:2 final size:2
Alignment explanation
Indices: 17219--17246 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
17209 ACACACACAC
17219 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17247 TAAAAGTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22202 original size:24 final size:24
Alignment explanation
Indices: 22175--22244 Score: 108
Period size: 22 Copynumber: 3.0 Consensus size: 24
22165 AATTGAATAA
*
22175 GCCACATAGTGGCCGTGAAATTCG
1 GCCACATAGTGGCCGTGAGATTCG
22199 G-C-CATAGTGGCCGTGAGATTCG
1 GCCACATAGTGGCCGTGAGATTCG
*
22221 GCCACATGGTGGCCGTGAGATTCG
1 GCCACATAGTGGCCGTGAGATTCG
22245 ACCATCCTTC
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
22 20 0.48
23 2 0.05
24 20 0.48
ACGTcount: A:0.20, C:0.24, G:0.34, T:0.21
Consensus pattern (24 bp):
GCCACATAGTGGCCGTGAGATTCG
Found at i:22485 original size:44 final size:43
Alignment explanation
Indices: 22437--22523 Score: 131
Period size: 44 Copynumber: 2.0 Consensus size: 43
22427 TGGAGAATTT
* *
22437 TAAAAGGCCATGTTGGAC-TTTCAATTTGACCAAGGTGGCTGTGA
1 TAAAAAGCCATGTTGG-CTTTTCAATTTGACCAAGGCGG-TGTGA
22481 TAAAAAGCCATGTTGGCTTTTCAATTTGACCAAGGCGGTGTGA
1 TAAAAAGCCATGTTGGCTTTTCAATTTGACCAAGGCGGTGTGA
22524 AGGCAAATCA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
43 6 0.15
44 34 0.85
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (43 bp):
TAAAAAGCCATGTTGGCTTTTCAATTTGACCAAGGCGGTGTGA
Found at i:26968 original size:11 final size:11
Alignment explanation
Indices: 26952--26981 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
26942 GAAATTCGTG
*
26952 TTTGAAGATTA
1 TTTGAAGATAA
26963 TTTGAAGATAA
1 TTTGAAGATAA
26974 TTTGAAGA
1 TTTGAAGA
26982 ATTAAAGACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (11 bp):
TTTGAAGATAA
Found at i:31441 original size:31 final size:31
Alignment explanation
Indices: 31388--31469 Score: 112
Period size: 31 Copynumber: 2.7 Consensus size: 31
31378 AATGTTGCTT
* *
31388 CATTT-ATGCAGAAAACGACCAAATTAGTGG
1 CATTTAATGAAGAAAACGCCCAAATTAGTGG
* *
31418 CATTTATTGAATAAAACGCCCAAATTAGTGG
1 CATTTAATGAAGAAAACGCCCAAATTAGTGG
*
31449 CATTTAATGAAGAAGACGCCC
1 CATTTAATGAAGAAAACGCCC
31470 CTAAATAGTT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
30 5 0.11
31 39 0.89
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.24
Consensus pattern (31 bp):
CATTTAATGAAGAAAACGCCCAAATTAGTGG
Found at i:37333 original size:2 final size:2
Alignment explanation
Indices: 37326--37364 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
37316 TAGAACAATT
* *
37326 TA TA TA TA TA TA TA TG TA TA TA TA TA TT TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
37365 GCTAATGTGG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (2 bp):
TA
Found at i:45303 original size:21 final size:22
Alignment explanation
Indices: 45277--45327 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
45267 GGTCTTGTCG
45277 ACATGGGTCT-TCAGTGTA-TTT
1 ACATGGGTCTCTCAGT-TATTTT
45298 ACATGGGT-TCTCAGTTATTTT
1 ACATGGGTCTCTCAGTTATTTT
*
45319 ATATGGGTC
1 ACATGGGTC
45328 CCCATGTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 3 0.12
21 23 0.88
ACGTcount: A:0.20, C:0.14, G:0.24, T:0.43
Consensus pattern (22 bp):
ACATGGGTCTCTCAGTTATTTT
Found at i:50649 original size:10 final size:10
Alignment explanation
Indices: 50634--50659 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
50624 AAAGACTCTA
50634 GAATTTTCTG
1 GAATTTTCTG
50644 GAATTTTCTG
1 GAATTTTCTG
50654 GAATTT
1 GAATTT
50660 GGCAGCAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.08, G:0.19, T:0.50
Consensus pattern (10 bp):
GAATTTTCTG
Found at i:51615 original size:640 final size:639
Alignment explanation
Indices: 49988--51906 Score: 3644
Period size: 639 Copynumber: 3.0 Consensus size: 639
49978 GTTAGATGAG
* * *
49988 GACTCTAGAATTTTCTGGAATTCTCTGGAATTTTGCAGCAACTTCGACGTCGATTTCGGGCTTAA
1 GACTCTAGAATTTTCTGGAATTTTCTGGAATTTGGCAGCAACTTCGACGTCGATTTCGGGCTTGA
* * * *
50053 AGATAGCAGATTTGGGCTTTACACTTCAAAAGAAAGTTGTAGAGCTCGGAGTTAGCTTTCCAACG
66 AGATGGCAGATCTGGGCTTTGCACTTCAAAATAAAGTTGTAGAGCTCGGAGTTAGCTTTCCAACG
* * * *
50118 TCTACTAATGGGCTTAAAACAGACATCTGAGCAGAAAGTTATGGCCTTTCTACGAAGACTGCGCT
131 GCTACTCATGGGCTTAAAACGGACATCTGAGCAGAAAGTTATAGCCTTTCTACGAAGACTGCGCT
*
50183 GAAACCGGGCTTATATCGCAAATCTGCGGGATTATTGCAGGATTTGGATATTCTTTTGGATATTA
196 GAAACCGGGCTTATATCGCAAATCTGCGGGATTATTGCGGGATTTGGATATTCTTTTGGATATTA
50248 GGCCTATTAATTGGGATTTTAACTCCAATTATAGGTTTATATGGGCTTAGTGTATTCCCATATAA
261 GGCCTATTAATTGGGATTTTAACTCCAATTATAGGTTTATATGGGCTTAGTGTATTCCCATATAA
*
50313 ATAATCCAAAAATCCTCAACTTCAGGGCTTCTTCTGGACTTGGCTTCAATTCTTTGCAATAAAGC
326 ATAATCCAAAAATCCTCAACTTCAGGGCTTCTTCTGAACTTGGCTTCAATTCTTTGCAATAAAGC
50378 TCCAAATCTTCAATTTTGCTTCTTGAATTAATTCTTCAATTATCTTCAAATCTTCAAAATATCTT
391 TCCAAATCTTCAATTTTGCTTCTTGAATTAATTCTTCAATTATCTTCAAATCTTCAAAATATCTT
50443 CAATCACGAACTTCGCATTTTCAAATCTTTATTCCAAATGCCTAAATCCATAGTTGAGTAAAAAG
456 CAATCACGAACTTCGCATTTTCAAATCTTTATTCCAAATGCCTAAATCCATAGTTGAGTAAAAAG
50508 TCTCCAAAATAGCTCCAAAAAGAGTGAAAAACAATAAGTTTTCACTTTTCTTGTCTTCAAGACCT
521 TCTCCAAAATAGCTCCAAAAAGAGTGAAAAACAATAAGTTTTCACTTTTCTTGTCTTCAAGACCT
50573 AAAAACACAAATACTAGCAAAATAGGTAAAAAACACATATAAAAATAGCAAAAA
586 AAAAACACAAATACTAGCAAAATAGGTAAAAAACACATATAAAAATAGCAAAAA
50627 GACTCTAGAATTTTCTGGAATTTTCTGGAATTTGGCAGCAACTTCGACGTCGATTTCGGGCTTGA
1 GACTCTAGAATTTTCTGGAATTTTCTGGAATTTGGCAGCAACTTCGACGTCGATTTCGGGCTTGA
50692 AGATGGCAGATCTGGGCTTTGCACTTCAAAATAAAGTTGTAGAGCTCGGAGTTAGCTTTCCAACG
66 AGATGGCAGATCTGGGCTTTGCACTTCAAAATAAAGTTGTAGAGCTCGGAGTTAGCTTTCCAACG
50757 GCTACTCATGGGCTTAAAACGGACATCTGAGCAGAAAGTTATAGCCTTTCTACGAAGACTGCGCT
131 GCTACTCATGGGCTTAAAACGGACATCTGAGCAGAAAGTTATAGCCTTTCTACGAAGACTGCGCT
50822 GAAACCGGGCTTATATCGCAAATCTGCGGGATTATTGCGGGATTTGGATATTCTTTTGGATATTA
196 GAAACCGGGCTTATATCGCAAATCTGCGGGATTATTGCGGGATTTGGATATTCTTTTGGATATTA
* *
50887 GGCCTATTAATTGGGATTTTAACTCCAATTATAGGTTTATATGGGCTGAGTATATTCCCATATAA
261 GGCCTATTAATTGGGATTTTAACTCCAATTATAGGTTTATATGGGCTTAGTGTATTCCCATATAA
*
50952 GTAATCCAAAAATCCTCAACTTCAGGGCTTCTTCTGAACTTGGCTTCAATTCTTTGCAATAAAGC
326 ATAATCCAAAAATCCTCAACTTCAGGGCTTCTTCTGAACTTGGCTTCAATTCTTTGCAATAAAGC
51017 TCCAAATCTTCAATTTTGCTTCTTGAATTAATTCTTCAATTATCTTCAAATCTTCAAAATATCTT
391 TCCAAATCTTCAATTTTGCTTCTTGAATTAATTCTTCAATTATCTTCAAATCTTCAAAATATCTT
51082 CAATCACGAACTTCGCATTTTCAAATCTTTATTCCAAATGCCTAAATCCATAGTTGAGTAAAAAG
456 CAATCACGAACTTCGCATTTTCAAATCTTTATTCCAAATGCCTAAATCCATAGTTGAGTAAAAAG
51147 TCTCCAAAATAGCTCCAAAAAGAGTGAAAAACAATAAGTTTTCACTTTTCTTGTCTTCAAGACCT
521 TCTCCAAAATAGCTCCAAAAAGAGTGAAAAACAATAAGTTTTCACTTTTCTTGTCTTCAAGACCT
51212 AAAAACACAAATACTAGCAAAATAGGTAAAAAACACATATAAAAATAGCAAAAA
586 AAAAACACAAATACTAGCAAAATAGGTAAAAAACACATATAAAAATAGCAAAAA
51266 GACTCTAGAATTTTCTTGGAATTTTCTGGAATTTGGCAGCAACTTCGACGTCGATTTCGGGCTTG
1 GACTCTAGAATTTTC-TGGAATTTTCTGGAATTTGGCAGCAACTTCGACGTCGATTTCGGGCTTG
51331 AAGATGGCAGATCTGGGCTTTGCACTTCAAAATAAAGTTGTAGAGCTCGGAGTTAGCTTTCCAAC
65 AAGATGGCAGATCTGGGCTTTGCACTTCAAAATAAAGTTGTAGAGCTCGGAGTTAGCTTTCCAAC
51396 GGCTACTCATGGGCTTAAAACGGACATCTGAGCAGAAAGTTATAGCCTTTCTACGAAGACTGCGC
130 GGCTACTCATGGGCTTAAAACGGACATCTGAGCAGAAAGTTATAGCCTTTCTACGAAGACTGCGC
51461 TGAAACCGGGCTTATATCGCAAATCTGCGGGATTATTGCGGGATTTGGATATTCTTTTGGATATT
195 TGAAACCGGGCTTATATCGCAAATCTGCGGGATTATTGCGGGATTTGGATATTCTTTTGGATATT
51526 AGGCCTATTAATTGGGATTTTAACTCCAATTATAGGTTTATATGGGCTTAGTGTATTCCCATATA
260 AGGCCTATTAATTGGGATTTTAACTCCAATTATAGGTTTATATGGGCTTAGTGTATTCCCATATA
51591 AATAATCCAAAAATCCTCAACTTCAGGGCTTCTTCTGAACTTGGCTTCAATTCTTTGCAATAAAG
325 AATAATCCAAAAATCCTCAACTTCAGGGCTTCTTCTGAACTTGGCTTCAATTCTTTGCAATAAAG
51656 CTCCAAATCTTCAATTTTGCTTCTTGAATTAATTCTTCAATTATCTTCAAATCTTCAAAATATCT
390 CTCCAAATCTTCAATTTTGCTTCTTGAATTAATTCTTCAATTATCTTCAAATCTTCAAAATATCT
*
51721 TCAATCACGAACTTCGCATTTTCAAATCTTTATTCCAAATGGCT-AATCCATAGTTGAGTAAAAA
455 TCAATCACGAACTTCGCATTTTCAAATCTTTATTCCAAATGCCTAAATCCATAGTTGAGTAAAAA
51785 GTCTCCAAAATAGCTCCAAAAAGAGTGAAAAACAATAAGTTTTCACTTTTCTTGTCTTCAAGACC
520 GTCTCCAAAATAGCTCCAAAAAGAGTGAAAAACAATAAGTTTTCACTTTTCTTGTCTTCAAGACC
51850 TAAAAACACAAATACTAGCAAAAATAGGGT-AAAAACACATATAAAAATAGCAAAAA
585 TAAAAACACAAATACTAGC-AAAATA-GGTAAAAAACACATATAAAAATAGCAAAAA
51906 G
1 G
51907 TATATAAAAA
Statistics
Matches: 1257, Mismatches: 20, Indels: 5
0.98 0.02 0.00
Matches are distributed among these distances:
639 742 0.59
640 512 0.41
641 3 0.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (639 bp):
GACTCTAGAATTTTCTGGAATTTTCTGGAATTTGGCAGCAACTTCGACGTCGATTTCGGGCTTGA
AGATGGCAGATCTGGGCTTTGCACTTCAAAATAAAGTTGTAGAGCTCGGAGTTAGCTTTCCAACG
GCTACTCATGGGCTTAAAACGGACATCTGAGCAGAAAGTTATAGCCTTTCTACGAAGACTGCGCT
GAAACCGGGCTTATATCGCAAATCTGCGGGATTATTGCGGGATTTGGATATTCTTTTGGATATTA
GGCCTATTAATTGGGATTTTAACTCCAATTATAGGTTTATATGGGCTTAGTGTATTCCCATATAA
ATAATCCAAAAATCCTCAACTTCAGGGCTTCTTCTGAACTTGGCTTCAATTCTTTGCAATAAAGC
TCCAAATCTTCAATTTTGCTTCTTGAATTAATTCTTCAATTATCTTCAAATCTTCAAAATATCTT
CAATCACGAACTTCGCATTTTCAAATCTTTATTCCAAATGCCTAAATCCATAGTTGAGTAAAAAG
TCTCCAAAATAGCTCCAAAAAGAGTGAAAAACAATAAGTTTTCACTTTTCTTGTCTTCAAGACCT
AAAAACACAAATACTAGCAAAATAGGTAAAAAACACATATAAAAATAGCAAAAA
Found at i:56584 original size:2 final size:2
Alignment explanation
Indices: 56577--56606 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
56567 CGAATGCGAT
56577 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
56607 AATCATATTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:57080 original size:149 final size:149
Alignment explanation
Indices: 56807--57091 Score: 381
Period size: 149 Copynumber: 1.9 Consensus size: 149
56797 TTTTTCTTAC
* * * ** ** *
56807 AAAATTCCAAAATTTCTTCTATTTACTAAATTGAACTTTTGTGTCTTTGGTCTCCAACCATTTGT
1 AAAATTCCAAAATTTATCCCATTTACTAAATTGAACTTTTACGTCTCAGGTCTACAACCATTTGT
* * * * *
56872 GTATCGGATAATTGCCCTTTTAATCTCGGAGACAAATATCCGATCCGTCCGAATTCATTTAGGCC
66 ATATCGGACAATTGCCCTTTGAATCTCGGAGACAAATATCCAATCCGTCCGAATCCATTTAGGCC
56937 GGATTTGGATAATGTAAAA
131 GGATTTGGATAATGTAAAA
* *
56956 AAAATTCCAAAATTTATCCCATTTACTAAATTGTACTTTTACGTCTCAGGTCTATAACCATTTGT
1 AAAATTCCAAAATTTATCCCATTTACTAAATTGAACTTTTACGTCTCAGGTCTACAACCATTTGT
* * ** * *
57021 ATATCGGACAATTGCCCTTTGGATCTCGGAGGCGGATATCCAATCCGTTCGAATCCATTTAGGGC
66 ATATCGGACAATTGCCCTTTGAATCTCGGAGACAAATATCCAATCCGTCCGAATCCATTTAGGCC
57086 GGATTT
131 GGATTT
57092 AGATCGTGAT
Statistics
Matches: 115, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
149 115 1.00
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (149 bp):
AAAATTCCAAAATTTATCCCATTTACTAAATTGAACTTTTACGTCTCAGGTCTACAACCATTTGT
ATATCGGACAATTGCCCTTTGAATCTCGGAGACAAATATCCAATCCGTCCGAATCCATTTAGGCC
GGATTTGGATAATGTAAAA
Found at i:57287 original size:167 final size:167
Alignment explanation
Indices: 56974--57293 Score: 369
Period size: 167 Copynumber: 1.9 Consensus size: 167
56964 AAAATTTATC
* * *
56974 CCATTTACTAAATTGTACTTTTACGTCTCAGGTCTATAACCATTTGTATATCGGACAATTGCCCT
1 CCATTTACTAAATTGAAATTTTACGTCTCAGGTCTACAACCATTTGTATATCGGACAATTGCCCT
* * * *
57039 TTGGATCTCGGAGGCGGATATCCAATCCGTTCGAATCCATTTAGGGCGGATTTAGATCGTGATAT
66 TTGGATCTCGGAAGCAGATATCCAATCCGTTCGAATCCATTTAGGACGAATTTAGATCGTGATAT
*
57104 ATGGATACAGAGCGAATTTGGATTTTCAGGATTTTTT
131 ATGAATACAGAGCGAATTTGGATTTTCAGGATTTTTT
* ** * * * * * * *
57141 CCATTTACTATATTGAAATTTTGTGTCTTAGGTCTCCAACCATTTTTGTATTGGACAATTGTCGT
1 CCATTTACTAAATTGAAATTTTACGTCTCAGGTCTACAACCATTTGTATATCGGACAATTGCCCT
* * * *
57206 TTGGATCTC-GAAGCAAGATATGCAATCCG-TCTGAATCCGTTTAGGATGAATTTGGATCAG-GA
66 TTGGATCTCGGAAGC-AGATATCCAATCCGTTC-GAATCCATTTAGGACGAATTTAGATC-GTGA
*
57268 TTTATGAATAC-GAAGCGAATTTGGAT
128 TATATGAATACAG-AGCGAATTTGGAT
57294 AGTGAAACTA
Statistics
Matches: 126, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
166 7 0.06
167 118 0.94
168 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (167 bp):
CCATTTACTAAATTGAAATTTTACGTCTCAGGTCTACAACCATTTGTATATCGGACAATTGCCCT
TTGGATCTCGGAAGCAGATATCCAATCCGTTCGAATCCATTTAGGACGAATTTAGATCGTGATAT
ATGAATACAGAGCGAATTTGGATTTTCAGGATTTTTT
Done.