Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014129.1 Corchorus capsularis cultivar CVL-1 contig14150, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9250
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:6906 original size:27 final size:26

Alignment explanation


    Indices: 6876--6930  Score: 74
    Period size: 27  Copynumber: 2.1  Consensus size: 26

       6866 CACCGATAAG

                          *    *       
       6876 TTCATCTCAAGTTTTTCCTGCGGTGAA
          1 TTCATCTCAAGTTTCTCCTACGGT-AA

                    *                 
       6903 TTCATCTCCAGTTTCTCCTACGGTAA
          1 TTCATCTCAAGTTTCTCCTACGGTAA

              
       6929 TT
          1 TT

       6931 GATTCTGCAG


Statistics
Matches: 25,  Mismatches: 3, Indels: 1
        0.86            0.10        0.03

Matches are distributed among these distances:
  26    4  0.16
  27   21  0.84

ACGTcount: A:0.18, C:0.25, G:0.15, T:0.42


Consensus pattern (26 bp):   
TTCATCTCAAGTTTCTCCTACGGTAA
Done.