Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001414.1 Corchorus capsularis cultivar CVL-1 contig01414, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 629

Length: 1049
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33


Found at i:256 original size:13 final size:13

Alignment explanation


    Indices: 238--263  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        228 CTTTCACAAA

                         
        238 ATTATCAACTAAT
          1 ATTATCAACTAAT

                         
        251 ATTATCAACTAAT
          1 ATTATCAACTAAT

        264 CATAATGGTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38


Consensus pattern (13 bp):   
ATTATCAACTAAT

Found at i:533 original size:23 final size:23

Alignment explanation


    Indices: 472--543  Score: 80
    Period size: 23  Copynumber: 3.2  Consensus size: 23

        462 ATTCGAAATA

                          *     *   
        472 TATAAATAATTAGAAATATAGAA-
          1 TATAAATAATTA-ATATATATAAT

                                   
        495 T-T-AATAATTAATATATATAAT
          1 TATAAATAATTAATATATATAAT

                                    
        516 TATAAATAGATTAA-ATATATAAT
          1 TATAAATA-ATTAATATATATAAT

                 
        539 TATAA
          1 TATAA

        544 TATTAAACAG


Statistics
Matches: 43,  Mismatches: 2, Indels: 8
        0.81            0.04        0.15

Matches are distributed among these distances:
  20    8  0.19
  21    9  0.21
  22    2  0.05
  23   19  0.44
  24    5  0.12

ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39


Consensus pattern (23 bp):   
TATAAATAATTAATATATATAAT
Done.