genome.fa.s14142.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014142.1 Corchorus capsularis cultivar CVL-1 contig14163, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81049

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2996--3032	16	2.3	16	100	0	74	16	0	0	83	0.64
5084--5159	30	2.5	30	83	12	77	15	14	28	40	1.87
8086--8360	72	3.8	72	86	4	362	31	18	28	22	1.97
9586--9862	26	9.5	32	69	26	170	19	12	25	41	1.87
9604--9949	58	6.0	58	93	0	584	20	13	25	40	1.89
17500--17563	21	3.2	20	82	8	76	37	12	20	29	1.89
17506--17563	19	2.9	19	84	5	71	37	12	20	29	1.89
18406--18440	17	2.1	17	94	0	61	37	14	17	31	1.89
18525--18567	21	2.0	21	95	0	77	30	16	9	44	1.79
23087--23120	16	2.1	16	94	0	59	32	14	17	35	1.91
23204--23246	21	2.0	21	95	0	77	30	16	9	44	1.79
25411--25535	62	2.0	62	100	0	250	22	25	20	32	1.98
30506--30613	26	4.0	26	74	9	101	20	19	4	55	1.60
30506--30613	55	2.0	53	82	7	128	20	19	4	55	1.60
30660--30736	27	2.9	26	74	12	68	24	24	1	49	1.58
30775--30848	29	2.7	27	79	20	91	16	24	2	56	1.53
30713--30846	66	2.0	66	84	7	173	17	23	2	56	1.52
30897--31082	22	8.2	22	73	14	119	24	20	4	50	1.68
31070--31118	7	7.0	7	81	9	55	16	18	2	63	1.41
31066--31097	15	2.2	14	94	5	55	15	21	0	62	1.32
31128--31188	22	2.8	22	82	0	77	26	22	3	47	1.67
31192--31254	30	2.1	30	90	0	99	22	14	6	57	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32172--32490	50	6.3	50	90	2	467	37	12	9	41	1.74
32164--32490	151	2.2	152	92	1	530	37	13	8	40	1.75
32172--32493	101	3.2	101	90	1	502	37	12	9	41	1.74
34190--34227	2	19.0	2	94	0	67	50	2	0	47	1.15
34682--34717	17	2.1	18	89	5	56	16	2	0	80	0.83
37473--37514	21	2.0	21	90	0	66	19	28	35	16	1.93
37494--37599	33	3.2	31	79	10	95	20	38	30	10	1.86
37537--37632	33	2.9	32	84	9	113	22	41	26	9	1.84
38536--38569	8	4.1	8	85	7	50	58	14	2	23	1.50
44025--44066	21	2.0	21	95	0	75	19	30	33	16	1.94
44076--44184	33	3.3	32	85	8	121	21	44	26	8	1.80
47407--47459	25	2.0	27	89	7	83	35	13	3	47	1.61
47457--47524	29	2.3	30	84	5	84	52	8	7	30	1.60
48510--48547	15	2.4	16	82	8	51	21	28	0	50	1.49
48596--48664	28	2.6	26	80	15	70	15	27	1	55	1.50
48711--48814	35	2.9	35	80	9	122	22	24	3	50	1.66
48861--48937	14	5.6	14	93	6	140	22	19	7	50	1.72
48865--48937	7	10.7	7	73	5	60	21	19	6	52	1.69
48851--48937	27	3.2	27	96	1	156	20	19	8	51	1.72
48932--49029	26	3.6	25	75	20	97	26	17	4	52	1.62
48959--49041	32	2.5	33	84	13	125	24	18	3	54	1.59
49342--49439	38	2.5	39	75	8	101	25	22	5	46	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52987--53117	35	3.7	35	84	4	158	29	23	19	28	1.98
53185--53220	18	2.0	18	88	0	54	36	11	22	30	1.89
63697--63756	15	4.3	14	73	14	61	18	21	0	60	1.37
63701--63826	27	4.7	27	69	18	75	18	22	2	57	1.52
63704--63786	35	2.4	35	86	7	109	19	20	2	57	1.51
63697--63975	14	19.8	14	64	22	52	17	21	3	56	1.57
63728--63924	46	4.1	48	72	21	155	18	21	4	55	1.60
63769--63887	60	2.0	61	85	5	161	17	21	5	54	1.64
63849--63968	35	3.4	35	82	5	161	17	21	5	55	1.60
63951--63975	7	3.6	7	100	0	50	16	28	0	56	1.41
68612--68683	28	2.6	28	88	2	101	41	30	12	15	1.84
71302--71439	33	4.3	33	94	2	228	43	19	11	25	1.85
71302--71472	66	2.6	66	85	4	197	42	19	11	26	1.85
71464--71560	33	2.9	33	84	0	131	44	20	10	24	1.83
73167--73200	8	4.1	8	85	7	50	23	2	14	58	1.50
79109--79138	6	5.0	6	100	0	60	50	16	0	33	1.46

Tables:   1

The End!