Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014144.1 Corchorus capsularis cultivar CVL-1 contig14165, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36403

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
636--690
18
3.0
17
82
12
65
34
0
7
58
1.26
749--810
18
3.4
18
79
2
70
33
1
9
54
1.43
728--792
28
2.3
29
82
12
82
35
0
10
53
1.36
1196--1255
22
2.8
20
80
7
57
36
0
5
58
1.20
7135--7201
34
1.9
35
82
14
86
31
5
5
56
1.47
11426--11459
17
2.0
17
100
0
68
64
11
5
17
1.45
15488--15536
21
2.3
21
82
6
55
16
28
14
40
1.87
19219--19248
8
3.9
8
91
8
53
86
0
0
13
0.57
19219--19248
15
2.0
15
100
0
60
86
0
0
13
0.57
20873--20977
33
3.2
33
79
5
113
25
9
20
43
1.82
21384--21476
30
3.1
29
89
6
141
31
17
32
19
1.95
21520--21557
18
2.1
19
90
5
60
34
13
34
18
1.89
26450--26540
45
2.1
43
89
4
137
26
23
16
34
1.95
26353--26944
210
2.8
208
87
4
753
36
15
15
32
1.89
27317--27383
34
1.9
34
87
6
98
35
11
8
43
1.73
28244--28275
13
2.4
14
85
15
50
18
18
9
53
1.71
34467--34532
35
2.0
32
88
8
96
16
34
34
13
1.88
34659--34683
10
2.5
10
100
0
50
28
8
28
36
1.85
35536--35604
32
2.2
32
89
0
111
17
37
33
11
1.86
35723--35750
10
2.8
10
100
0
56
28
7
32
32
1.84
35787--35831
21
2.1
21
87
0
63
42
11
37
8
1.72

Tables:   1

The End!