Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014145.1 Corchorus capsularis cultivar CVL-1 contig14166, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63531

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15886--16009
40
3.1
39
83
3
158
49
8
17
25
1.74
16018--16326
37
8.4
37
85
4
383
45
9
19
24
1.80
16009--16326
109
2.9
109
87
5
444
45
9
19
24
1.80
16353--16465
37
3.2
37
80
9
121
39
8
23
28
1.84
16371--16620
37
7.2
32
77
15
141
40
8
22
28
1.83
16458--16641
36
5.2
36
87
8
252
41
8
21
28
1.82
16454--16679
104
2.1
107
79
11
239
43
7
21
26
1.80
24649--24694
22
2.1
22
84
8
58
23
10
8
56
1.61
25853--25900
24
2.0
25
83
4
62
16
6
6
70
1.28
31094--31213
60
2.0
60
95
0
213
14
22
5
57
1.58
32484--32532
12
3.9
12
80
15
55
55
0
2
42
1.11
32484--32529
20
2.6
18
77
22
53
56
0
2
41
1.11
32484--32531
18
2.5
20
77
16
57
56
0
2
41
1.11
34719--34751
7
4.7
7
89
10
50
0
3
9
87
0.63
38423--38572
74
2.0
74
84
2
194
41
11
24
23
1.87
39697--39756
15
3.8
15
72
18
50
56
1
1
40
1.19
40190--40267
14
5.3
15
73
17
58
41
1
2
55
1.22
40190--40267
10
7.9
10
71
22
58
41
1
2
55
1.22
42143--42200
16
3.6
16
80
13
66
43
41
12
3
1.59
42723--42753
2
15.5
2
100
0
62
51
0
0
48
1.00
42867--42974
22
5.1
20
68
17
58
31
11
12
45
1.76
42845--42973
62
2.1
62
88
2
188
34
11
10
43
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43001--43047
22
2.2
21
85
7
60
27
14
4
53
1.60
43044--43085
22
1.9
22
85
0
57
33
21
14
30
1.93
43166--43222
23
2.5
23
80
11
64
40
15
12
31
1.85
43211--43479
22
12.5
21
74
12
174
33
15
10
40
1.82
43585--43659
22
3.5
22
85
1
98
34
14
9
41
1.78
50515--50617
33
3.1
33
79
5
109
26
9
18
45
1.80
51699--51743
20
2.2
20
84
4
54
66
8
8
15
1.43
52473--52508
18
2.1
17
94
5
63
63
8
16
11
1.49
56967--57034
26
2.7
25
81
4
84
11
16
22
50
1.77
56990--57057
26
2.6
25
75
11
66
14
14
22
48
1.80
61917--62005
21
4.3
20
78
7
88
20
20
7
51
1.71
62000--62357
22
16.1
22
72
16
170
18
20
5
55
1.63
61999--62335
44
7.6
44
73
15
230
17
19
6
56
1.62
62060--62115
15
3.9
15
68
17
55
16
25
5
53
1.63
62541--62584
22
1.9
24
90
9
74
31
20
4
43
1.72
62666--62781
56
2.1
56
90
3
182
25
18
7
48
1.74

Tables:   1

The End!