genome.fa.s14148.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014148.1 Corchorus capsularis cultivar CVL-1 contig14169, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70272

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1461--1485	3	8.3	3	100	0	50	68	0	0	32	0.90
5498--5555	27	2.1	27	90	6	91	13	20	15	50	1.78
7608--7654	15	3.1	15	74	14	51	23	8	17	51	1.72
9464--9742	71	4.0	71	93	1	465	37	16	11	34	1.85
14709--14748	21	1.9	21	89	0	62	35	12	25	27	1.92
15533--15651	31	3.9	31	77	4	116	39	20	13	26	1.89
16372--16568	51	3.9	50	93	0	304	38	20	5	35	1.76
16372--16570	101	2.0	101	90	2	319	38	20	5	35	1.76
19140--19180	21	2.0	21	100	0	82	39	4	36	19	1.73
27359--27426	33	2.1	33	91	2	111	47	4	30	17	1.68
27521--27589	35	1.9	36	94	2	122	21	21	14	42	1.89
28383--28450	30	2.3	29	85	12	86	27	8	22	41	1.83
28716--28780	26	2.6	25	87	4	96	43	3	15	38	1.62
34359--34426	22	3.1	22	87	6	77	54	0	0	45	0.99
34372--34426	21	2.5	22	91	5	85	50	0	0	49	1.00
37457--37526	35	2.0	35	94	0	122	45	12	22	18	1.83
40782--40819	2	19.0	2	100	0	76	50	50	0	0	1.00
53244--53274	16	1.9	16	93	0	53	19	6	25	48	1.72
55560--55624	30	2.2	30	84	10	82	50	12	4	32	1.60
58785--58819	2	18.0	2	88	5	54	51	2	0	45	1.16
59765--59800	2	17.0	2	88	11	54	47	2	2	47	1.31
59761--59798	8	4.3	9	93	6	53	44	5	2	47	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65254--65299	17	2.7	17	72	24	51	36	13	15	34	1.86
66226--66271	2	23.0	2	100	0	92	0	0	50	50	1.00
66728--66827	22	4.5	22	75	14	71	37	16	15	32	1.89
66704--66827	44	2.8	44	82	0	140	40	15	13	30	1.86
66789--66846	22	2.6	22	86	0	71	41	15	12	31	1.84
67183--67240	22	2.6	22	76	10	64	32	10	17	39	1.83
68190--68229	21	1.9	21	89	0	62	37	15	5	42	1.68
69086--69215	66	2.0	66	98	0	251	42	18	6	32	1.77

Tables:   1

The End!