genome.fa.s14155.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014155.1 Corchorus capsularis cultivar CVL-1 contig14176, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58466

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3516--3588	28	2.6	28	91	0	110	15	12	28	43	1.82
7303--7626	55	5.9	55	92	0	504	48	8	19	24	1.76
7386--7471	26	3.2	26	64	20	68	47	6	22	23	1.75
7303--7626	165	2.0	165	93	0	558	48	8	19	24	1.76
7598--7655	26	2.2	26	84	0	71	50	8	18	22	1.74
7853--8136	21	13.4	22	75	11	229	54	5	20	19	1.64
7853--8136	22	13.4	21	73	10	213	54	5	20	19	1.64
7947--8039	14	6.7	13	70	11	51	56	2	20	20	1.52
8150--8226	35	2.2	35	88	2	111	58	3	22	15	1.53
8163--8227	15	4.5	15	70	18	50	61	1	21	15	1.42
8176--8238	27	2.3	27	73	10	65	61	1	23	12	1.39
8212--8248	19	1.9	19	88	0	56	59	2	24	13	1.47
8149--8309	48	3.8	40	75	19	116	56	3	24	16	1.54
8184--8313	48	2.8	47	87	5	183	56	2	25	16	1.52
8273--8386	36	3.2	36	78	9	119	51	3	28	15	1.60
9871--9919	2	25.0	2	84	12	66	46	2	2	48	1.25
9992--10036	18	2.4	18	81	7	54	55	8	0	35	1.31
12515--12628	59	1.9	58	96	1	210	22	15	13	48	1.80
15906--15954	26	1.9	25	83	4	62	18	20	12	48	1.79
33163--33214	25	2.1	25	96	0	95	50	7	7	34	1.60
34121--34150	2	15.5	2	93	6	53	50	0	0	50	1.00
37346--37377	1	32.0	1	100	0	64	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41813--41839	14	1.9	14	100	0	54	7	25	22	44	1.79
44582--44682	53	1.9	52	93	2	175	27	11	13	46	1.79
44880--44941	6	10.5	6	74	19	51	35	50	12	1	1.51
44884--44941	16	3.7	15	80	13	64	37	48	12	1	1.51
45697--45740	11	3.9	11	79	5	52	18	52	27	2	1.57
45696--45749	23	2.3	23	80	0	63	25	48	24	1	1.61
45716--45748	17	1.9	17	93	0	57	27	48	21	3	1.64
45742--45843	16	6.5	16	92	4	172	43	37	13	5	1.69
45742--45843	31	3.2	32	93	4	172	43	37	13	5	1.69
45742--45843	47	2.2	47	96	0	186	43	37	13	5	1.69
45742--45857	47	2.5	47	91	0	169	39	39	14	6	1.71
46161--46703	22	24.7	22	66	13	111	36	13	10	39	1.79
46248--46703	44	10.3	43	69	12	178	36	14	10	38	1.80
46432--46533	23	4.5	24	81	8	117	39	13	8	38	1.76
46432--46533	46	2.3	45	88	6	145	39	13	8	38	1.76
46691--46741	19	2.6	20	84	6	77	27	19	11	41	1.86
46853--47093	22	11.0	22	69	11	129	33	13	10	42	1.79
46853--47038	66	2.8	67	76	9	175	34	12	9	42	1.76
46822--47015	44	4.4	44	73	8	139	35	12	9	42	1.76
46822--46988	88	1.9	88	81	9	207	34	12	10	42	1.78
46980--47085	21	4.8	23	70	19	73	32	14	10	43	1.79
47180--47229	24	2.2	24	85	7	68	34	18	12	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47275--47322	22	2.2	22	88	0	69	45	22	4	27	1.70
47336--47431	22	4.4	22	76	10	81	38	18	9	33	1.83
47561--47586	6	4.3	6	100	0	52	15	0	34	50	1.45
47683--47749	31	2.1	31	86	2	89	49	4	16	29	1.65
47690--47755	31	2.1	31	88	0	96	48	4	19	27	1.68

Tables:   1

The End!