Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014156.1 Corchorus capsularis cultivar CVL-1 contig14177, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106315

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--1353
26
49.8
26
82
11
1480
34
23
15
27
1.94
1084--1121
19
2.0
19
100
0
76
36
26
10
26
1.89
922--1249
181
1.8
181
89
2
525
34
23
15
27
1.94
17483--17547
34
1.9
34
90
0
103
29
16
20
33
1.95
35129--35155
2
13.5
2
100
0
54
48
0
0
51
1.00
37149--37261
18
6.8
16
81
13
115
73
0
0
26
0.83
37156--37252
3
33.7
3
87
8
148
72
0
0
27
0.85
37618--37678
19
3.4
17
82
13
61
4
32
1
60
1.28
46246--46302
28
2.1
26
84
15
71
45
5
1
47
1.35
50795--51288
164
3.0
164
99
0
970
32
18
13
35
1.89
52761--52789
5
5.8
5
100
0
58
0
0
37
62
0.96
56756--56796
14
2.9
15
79
13
52
58
19
0
21
1.39
60981--61014
2
16.5
2
93
6
59
50
0
2
47
1.16
65814--65857
21
2.1
21
86
0
61
18
25
9
47
1.77
66161--66229
33
2.1
33
94
0
120
8
34
42
14
1.77
66214--66301
33
2.7
33
87
3
124
10
31
39
18
1.84
66307--66348
14
2.7
15
82
14
50
54
4
26
14
1.59
67036--67403
107
3.5
107
94
1
611
40
8
9
41
1.67
75084--75334
125
2.0
125
100
0
502
25
21
19
33
1.97
84235--84276
3
13.7
3
85
5
57
0
40
0
59
0.97
84235--84276
9
4.6
9
93
3
66
0
40
0
59
0.97
93899--93945
26
1.9
23
87
12
67
38
4
0
57
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102104--102138
2
18.0
2
94
5
63
48
0
0
51
1.00

Tables:   1

The End!