Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001416.1 Corchorus capsularis cultivar CVL-1 contig01416, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 604

Length: 1008
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24


Found at i:33 original size:13 final size:13

Alignment explanation


    Indices: 15--41  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

          5 GTCACCGGAT

                         
         15 TCCTTCAATTCAA
          1 TCCTTCAATTCAA

                         
         28 TCCTTCAATTCAA
          1 TCCTTCAATTCAA

             
         41 T
          1 T

         42 ATGTATGGTG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.30, C:0.30, G:0.00, T:0.41


Consensus pattern (13 bp):   
TCCTTCAATTCAA
Done.