Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014162.1 Corchorus capsularis cultivar CVL-1 contig14183, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2732
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29


Found at i:224 original size:12 final size:12

Alignment explanation


    Indices: 207--232  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        197 GAATGTCATC

                        
        207 TTCATTTATCCA
          1 TTCATTTATCCA

                        
        219 TTCATTTATCCA
          1 TTCATTTATCCA

              
        231 TT
          1 TT

        233 TACATCATGT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.23, C:0.23, G:0.00, T:0.54


Consensus pattern (12 bp):   
TTCATTTATCCA
Done.