Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014164.1 Corchorus capsularis cultivar CVL-1 contig14185, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17393

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3438--3475
11
3.5
11
85
7
51
86
0
13
0
0.56
3437--3472
14
2.4
15
86
13
56
86
0
13
0
0.58
5113--5142
2
15.5
2
93
6
53
50
0
0
50
1.00
6153--6177
2
12.5
2
100
0
50
52
0
0
48
1.00
6838--6934
45
2.2
45
90
5
153
34
3
21
41
1.69
8573--8604
3
10.7
3
100
0
64
65
0
0
34
0.93
8650--8684
3
11.7
3
100
0
70
65
0
0
34
0.93
8881--8927
11
4.5
11
89
2
53
46
8
2
42
1.46
8873--8906
2
17.0
2
100
0
68
50
0
0
50
1.00
10018--10273
121
2.1
121
90
0
395
31
14
19
34
1.92
14488--14549
32
2.0
31
90
3
97
29
9
19
41
1.83
15193--15365
22
7.7
23
73
9
101
41
9
10
38
1.72
15364--15440
36
2.1
36
100
0
154
49
15
12
22
1.78
15444--15473
2
15.5
2
93
6
53
53
0
0
46
1.00
16174--16233
13
4.7
13
75
20
56
36
1
0
61
1.06
16987--17025
6
6.7
6
91
5
62
30
0
2
66
1.05

Tables:   1

The End!