Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014173.1 Corchorus capsularis cultivar CVL-1 contig14194, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13885
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34


Found at i:1148 original size:17 final size:17

Alignment explanation


    Indices: 1119--1151  Score: 50
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       1109 GATTACGAAA

                             
       1119 TTCTTTTCATTTTTTTT
          1 TTCTTTTCATTTTTTTT

                             
       1136 TTCTTCTTC-TTTTTTT
          1 TTCTT-TTCATTTTTTT

       1152 CTTCATTCAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  17   12  0.80
  18    3  0.20

ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82


Consensus pattern (17 bp):   
TTCTTTTCATTTTTTTT

Found at i:6116 original size:2 final size:2

Alignment explanation


    Indices: 6104--6140  Score: 65
    Period size: 2  Copynumber: 18.5  Consensus size: 2

       6094 AAAAATATCC

                  *                                                
       6104 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       6141 GTGCATCGGG


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   33  1.00

ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49


Consensus pattern (2 bp):   
TA

Done.