genome.fa.s14176.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014176.1 Corchorus capsularis cultivar CVL-1 contig14197, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39538

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1996--2048	26	2.1	27	82	10	67	52	1	39	5	1.36
2248--2293	23	2.0	23	83	8	58	17	10	2	69	1.27
3812--3847	19	1.9	18	88	5	54	41	2	22	33	1.68
12193--12516	41	7.7	41	76	8	303	25	9	25	39	1.85
12185--12515	85	3.9	85	89	2	470	25	9	24	39	1.86
16831--16866	18	2.0	18	100	0	72	33	11	16	38	1.84
19314--19529	50	4.4	49	80	6	231	39	5	18	35	1.75
19314--19453	49	2.8	49	91	1	181	41	5	17	35	1.72
19312--19530	99	2.2	98	77	7	237	40	5	18	35	1.74
20335--20536	71	2.8	71	85	5	239	47	6	19	26	1.74
20462--20523	32	1.9	32	87	9	90	46	6	24	22	1.75
20669--20715	24	2.0	24	91	0	76	42	4	17	36	1.68
20901--21128	28	8.4	28	71	17	110	54	3	21	19	1.59
24632--24846	63	3.3	62	77	14	227	24	10	20	43	1.84
29042--29075	8	4.1	8	85	7	50	58	14	2	23	1.50
30605--30709	33	3.2	32	81	5	129	24	9	20	45	1.80
30728--30847	33	3.6	33	90	2	170	30	10	20	38	1.87
31182--31244	30	2.1	30	91	5	101	28	15	34	20	1.94
33267--33515	22	11.1	25	70	20	87	19	20	4	55	1.61
33320--33532	21	10.0	21	76	13	170	20	20	5	54	1.63
33322--33564	42	5.7	42	76	9	226	20	20	5	53	1.64
33186--33564	64	5.8	64	77	14	314	21	20	5	53	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33319--33564	85	2.9	85	80	5	275	19	20	5	54	1.63
33748--33890	72	2.0	70	85	9	191	25	18	6	48	1.71
33831--33878	15	2.9	16	79	14	53	25	16	6	52	1.67
33836--34040	55	3.7	54	91	2	320	25	17	6	49	1.71
33955--34124	92	1.9	91	96	1	313	24	18	6	50	1.70
37830--37880	22	2.3	23	82	3	68	49	19	9	21	1.77
37837--37879	23	1.9	22	90	4	68	48	18	9	23	1.76
37986--38055	27	2.5	28	81	4	88	38	28	17	15	1.90

Tables:   1

The End!