Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014177.1 Corchorus capsularis cultivar CVL-1 contig14198, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7622
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30


Found at i:7478 original size:30 final size:29

Alignment explanation


    Indices: 7444--7505  Score: 81
    Period size: 30  Copynumber: 2.1  Consensus size: 29

       7434 ATGCTGTGAC

                         *    *            
       7444 AAAACTT-ATTCATTTTTTTTGAATTTTCCA
          1 AAAACTTGATT-AATTTTATTG-ATTTTCCA

                                         
       7474 AAAACTTGATTAATTTTATTGATTTTCCA
          1 AAAACTTGATTAATTTTATTGATTTTCCA

               
       7503 AAA
          1 AAA

       7506 TCCCTTTTTT


Statistics
Matches: 29,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  29   11  0.38
  30   15  0.52
  31    3  0.10

ACGTcount: A:0.35, C:0.11, G:0.05, T:0.48


Consensus pattern (29 bp):   
AAAACTTGATTAATTTTATTGATTTTCCA
Done.