Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014178.1 Corchorus capsularis cultivar CVL-1 contig14199, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7529
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31


Found at i:1847 original size:33 final size:33

Alignment explanation


    Indices: 1806--1890  Score: 143
    Period size: 33  Copynumber: 2.6  Consensus size: 33

       1796 GCATGTGACA

                                             
       1806 ACAACCGGCCATCGCTTGGCGCACCAACCAGCC
          1 ACAACCGGCCATCGCTTGGCGCACCAACCAGCC

             *                           *   
       1839 ATAACCGGCCATCGCTTGGCGCACCAACCGGCC
          1 ACAACCGGCCATCGCTTGGCGCACCAACCAGCC

                          *    
       1872 ACAACCGGCCATCGATTGG
          1 ACAACCGGCCATCGCTTGG

       1891 GCCATCCGGG


Statistics
Matches: 48,  Mismatches: 4, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  33   48  1.00

ACGTcount: A:0.24, C:0.41, G:0.24, T:0.12


Consensus pattern (33 bp):   
ACAACCGGCCATCGCTTGGCGCACCAACCAGCC
Done.